PDBsum entry 7upy Go to PDB code:  Pore analysis for: 7upy calculated with MOLE 2.0 PDB id 7upy Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   33 pores, coloured by radius 32 pores, coloured by radius 32 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 3.12 3.69 25.7 -1.10 -0.28 25.5 74 2 7 0 4 1 3 0   2 3.78 4.48 26.9 -2.03 -0.81 21.9 88 2 3 3 2 0 0 0   3 1.67 1.80 29.0 -1.19 -0.28 15.1 80 3 2 4 2 2 0 0   4 1.67 1.80 31.5 -1.41 -0.41 9.6 93 1 1 6 1 2 0 0   5 3.10 3.68 32.3 -0.66 -0.10 20.3 78 2 6 0 6 1 2 0   6 3.20 3.77 35.4 -1.05 -0.20 22.3 77 2 7 0 5 2 3 0   7 2.56 2.73 47.8 -1.16 -0.58 7.2 88 1 2 9 3 1 1 1   8 2.24 2.88 50.3 -1.89 -0.50 17.9 88 6 4 10 4 0 0 0   9 2.58 2.74 52.9 -1.15 -0.54 10.3 88 3 3 9 3 1 1 1   10 2.26 2.71 56.8 -1.03 -0.40 18.6 83 6 7 7 8 0 0 0   11 2.16 2.33 58.6 -2.07 -0.57 23.9 84 7 6 5 2 2 0 0   12 2.11 2.71 65.9 -2.32 -0.59 24.8 86 8 6 7 2 1 2 0   13 1.77 1.84 73.1 -2.24 -0.53 27.2 84 6 6 5 3 2 0 0   14 2.12 2.75 79.7 -2.18 -0.45 28.1 82 7 8 4 5 3 2 0   15 2.15 2.33 81.3 -1.72 -0.48 20.0 86 9 4 9 3 2 0 0   16 2.09 2.07 85.6 -1.56 -0.54 18.5 82 7 10 13 11 1 1 0   17 2.09 2.76 88.9 -1.68 -0.55 19.7 84 10 8 7 4 2 2 2   18 2.14 2.77 94.8 -1.40 -0.33 24.1 83 7 11 6 8 3 2 0   19 1.79 1.87 95.8 -1.75 -0.45 21.0 86 8 4 9 4 2 0 0   20 1.83 1.88 96.3 -2.03 -0.42 27.9 83 7 8 5 6 3 2 0   21 2.41 2.82 100.4 -1.22 -0.38 17.3 87 7 9 13 9 2 0 0   22 1.76 1.84 101.8 -1.66 -0.43 18.8 87 7 6 12 7 2 0 0   23 1.32 1.52 116.8 -1.09 -0.30 16.5 82 10 10 10 14 4 2 0   24 2.53 2.74 124.6 -0.86 -0.35 15.0 85 7 11 13 10 3 0 2   25 1.94 2.01 126.1 -1.21 -0.42 15.5 85 7 8 12 8 3 0 2   26 1.42 1.52 152.8 -1.64 -0.48 19.9 82 11 14 16 15 5 3 0   27 1.58 1.72 159.2 -1.40 -0.45 20.0 83 14 14 15 15 4 2 0   28 1.53 1.69 198.5 -1.61 -0.54 18.5 84 17 15 21 14 3 4 1   29 1.59 1.67 204.1 -1.24 -0.42 13.3 86 15 11 23 12 6 5 1   30 1.17 1.41 209.9 -1.31 -0.43 15.5 86 15 11 23 14 6 4 0   31 1.69 2.45 26.6 -1.32 -0.37 19.1 85 2 1 2 3 0 2 0   32 1.69 2.45 26.6 -1.32 -0.37 19.1 85 2 1 2 3 0 2 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.