 |
PDBsum entry 7um6
|
|
|
|
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
|
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
|
|
|
|
|
|
|
|
|
|
Pore analysis for: 7um6 calculated with MOLE 2.0
|
PDB id
|
|
|
|
7um6
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
Pores calculated on whole structure |
 |
Pores calculated excluding ligands
|
|
|
 |
 |
 |
 |
 |
|
 |
|
|
|
 |
 |
|
 |
|
|
|
 |
10 pores,
coloured by radius |
 |
12 pores,
coloured by radius
|
12 pores,
coloured as in list below
|
|
|
 |
 |
 |
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. |
|
|
 |
|
|
|
 |
Free R
|
 |
|
|
|
|
 |
Length
|
 |
|
|
|
|
 |
HPathy
|
 |
|
|
|
|
 |
HPhob
|
 |
|
|
|
|
 |
Polar
|
 |
|
|
|
|
 |
Rel Mut
|
 |
|
|
|
|
 |
Residue..type
|
 |
|
|
|
|
 |
Ligands
|
 |
|
|
|
|
|
 |
Radius |
 |
1 |
 |
2.68 |
2.71 |
25.5 |
-0.28 |
-0.23 |
16.1 |
85 |
 |
5 |
2 |
0 |
6 |
0 |
0 |
0 |
 |
|
 |
 |
2 |
 |
2.67 |
2.72 |
26.6 |
-1.45 |
-0.63 |
19.7 |
91 |
3 |
3 |
2 |
3 |
0 |
0 |
0 |
|
 |
3 |
 |
1.41 |
2.84 |
26.6 |
0.42 |
0.23 |
14.2 |
77 |
2 |
2 |
2 |
5 |
2 |
1 |
0 |
H8G 401 A
|
 |
4 |
 |
2.49 |
2.72 |
34.0 |
-0.63 |
-0.30 |
11.0 |
91 |
2 |
2 |
5 |
4 |
0 |
0 |
0 |
|
 |
5 |
 |
2.10 |
2.31 |
36.0 |
-0.15 |
-0.24 |
12.6 |
88 |
3 |
3 |
1 |
8 |
0 |
0 |
0 |
|
 |
6 |
 |
1.70 |
1.79 |
36.5 |
-0.48 |
-0.28 |
16.1 |
78 |
3 |
1 |
2 |
6 |
0 |
0 |
0 |
H8G 401 A
|
 |
7 |
 |
2.49 |
2.71 |
37.9 |
0.77 |
0.07 |
9.1 |
85 |
4 |
1 |
1 |
8 |
0 |
0 |
0 |
|
 |
8 |
 |
1.20 |
1.43 |
43.2 |
1.41 |
0.72 |
7.4 |
67 |
0 |
2 |
1 |
10 |
4 |
1 |
1 |
H8G 401 A
|
 |
9 |
 |
1.70 |
1.69 |
72.9 |
-1.73 |
-0.35 |
15.7 |
88 |
5 |
4 |
8 |
3 |
3 |
0 |
0 |
|
 |
10 |
 |
2.05 |
2.06 |
136.0 |
-1.24 |
-0.51 |
14.8 |
85 |
9 |
5 |
7 |
7 |
1 |
1 |
3 |
|
 |
11 |
 |
0.69 |
2.89 |
143.5 |
0.32 |
0.39 |
8.4 |
76 |
6 |
2 |
8 |
24 |
9 |
1 |
3 |
H8G 401 A
|
 |
12 |
 |
0.71 |
2.95 |
160.1 |
0.47 |
0.36 |
7.5 |
78 |
8 |
3 |
10 |
24 |
10 |
2 |
2 |
H8G 401 A
|
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
Residue-type_colouring |
 |
|
 |
|
Positive
|
Negative
|
Neutral
|
Aliphatic
|
Aromatic
|
Pro & Gly
|
Cysteine
|
|
H,K,R
|
D,E
|
S,T,N,Q
|
A,V,L,I,M
|
F,Y,W
|
P,G
|
C
|
|
|
 |