spacer
spacer

PDBsum entry 7tyh

Go to PDB code: 
Top Page protein Protein-protein interface(s) pores links
Pore analysis for: 7tyh calculated with MOLE 2.0 PDB id
7tyh
Pores calculated on whole structure Pores calculated excluding ligands

View options
MOLEonline 2.0 manipulation
and
visualization
with HETATM:
without HETATM:
 
14 pores, coloured by radius 14 pores, coloured by radius 14 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 2.86 4.54 25.3 -0.52 -0.36 7.4 88 1 0 4 3 0 0 0  
2 2.30 3.19 25.8 -1.56 -0.35 19.9 85 2 2 4 4 0 0 0  
3 1.34 2.45 39.9 -2.18 -0.56 26.5 83 5 3 4 2 1 0 1  
4 1.23 2.13 44.5 -0.41 -0.09 11.7 81 3 2 0 6 2 1 0  
5 1.23 2.20 65.1 -1.35 -0.26 22.3 83 7 6 4 8 1 0 1  
6 1.39 2.44 72.5 -1.99 -0.57 19.9 83 7 6 5 1 3 1 0  
7 1.19 2.18 72.5 -1.50 -0.33 22.7 83 8 5 5 7 3 0 0  
8 1.52 1.73 73.6 -1.98 -0.52 20.6 82 7 7 4 1 2 1 1  
9 1.84 3.67 101.0 -1.15 -0.48 15.7 85 7 7 6 7 3 1 1  
10 1.60 1.81 133.5 -1.73 -0.48 22.7 85 12 10 11 7 2 0 2  
11 1.26 2.22 134.5 -1.16 -0.32 18.7 85 10 7 9 12 3 0 1  
12 1.53 1.58 28.0 1.08 0.34 6.1 80 1 1 1 9 3 0 1  
13 1.42 1.42 45.7 -1.93 -0.52 21.8 81 4 4 3 0 1 2 0  
14 1.49 1.64 51.8 -1.76 -0.38 24.9 75 5 5 2 1 4 1 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
spacer
spacer