spacer
spacer

PDBsum entry 7txh

Go to PDB code: 
Top Page protein ligands metals Protein-protein interface(s) pores links
Pore analysis for: 7txh calculated with MOLE 2.0 PDB id
7txh
Pores calculated on whole structure Pores calculated excluding ligands

View options
MOLEonline 2.0 manipulation
and
visualization
with HETATM:
without HETATM:
 
14 pores, coloured by radius 14 pores, coloured by radius 14 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.90 2.17 33.6 -1.88 -0.55 23.1 87 5 3 5 2 0 0 0  GOL 204 D GOL 601 E
2 2.10 2.32 42.4 -2.42 -0.57 23.5 76 5 2 4 2 0 0 1  
3 1.94 1.98 43.1 -1.85 -0.03 21.8 72 5 1 3 3 3 1 0  PO4 606 E
4 1.79 4.10 46.9 -2.58 -0.55 30.8 83 8 7 3 1 1 1 0  
5 1.68 3.08 48.3 -2.19 -0.44 32.5 83 7 7 2 2 1 0 1  
6 1.77 1.88 55.0 -2.71 -0.50 30.1 80 10 4 4 1 1 1 0  
7 1.58 1.70 65.3 -1.87 -0.43 23.8 82 10 5 5 3 1 1 0  GOL 601 B GOL 504 C
8 1.58 2.68 65.1 -2.95 -0.67 31.4 83 9 7 5 2 0 0 0  
9 1.14 1.20 84.5 -1.72 -0.42 17.6 80 6 6 8 3 4 2 0  
10 1.15 1.20 86.9 -2.01 -0.46 25.0 81 9 10 7 3 3 1 0  
11 1.61 1.78 96.2 -2.50 -0.55 34.0 82 17 10 5 3 0 1 0  GOL 601 B
12 1.36 1.38 182.9 -2.17 -0.52 26.7 82 14 23 9 4 3 4 0  GOL 505 C GOL 505 F
13 1.71 1.89 175.3 -2.21 -0.39 23.2 82 6 7 3 4 1 2 0  
14 1.43 1.77 191.8 -2.79 -0.50 32.7 84 14 11 7 3 1 1 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
spacer
spacer