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PDBsum entry 7syp
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Top Page protein dna_rna metals Protein-protein interface(s) pores links
Pore analysis for: 7syp calculated with MOLE 2.0 PDB id
7syp
Pores calculated on whole structure Pores calculated excluding ligands
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30 pores, coloured by radius 30 pores, coloured by radius 30 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 2.86 2.86 40.7 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  G 1702 2 C 1704 2 C 1705 2 G 1706 2 U 1707 2 C
1708 2 G 1709 2 C 1710 2 A 1818 2 A 1819 2 U 1821
2 A 1822 2 A 1824 2 A 1825 2 G 1826 2 U 1827 2 G
1849 2 DA 19 7
2 1.62 1.70 80.0 -1.19 -0.52 14.8 80 7 1 3 4 0 0 0  C 1557 2 C 1558 2 C 1559 2 U 1560 2 G 1570 2 G
1571 2 C 1572 2 G 1573 2 C 1574 2 A 1607 2 U 1608
2 C 1609 2 G 1610 2 G 1611 2 G 1612 2 U 1621 2 A
1623 2 C 1626 2 C 1627 2 C 1628 2 C 1629 2 A 1630
2 U 1631 2 A 1663 2 A 1664 2 G 1665 2
3 2.36 2.51 89.1 -0.73 -0.79 7.8 85 2 1 0 1 0 0 0  G 1097 2 C 1098 2 G 1099 2 C 1135 2 U 1136 2 U
1137 2 C 1138 2 A 1145 2 G 1168 2 G 1197 2 G 1198
2 A 1199 2 A 1200 2 U 1201 2 A 1353 2 U 1359 2 A
1378 2 A 1379 2 G 1693 2 U 1694 2 A 1695 2 C 1705
2 G 1706 2 U 1707 2 C 1708 2 G 1709 2 C 1710 2 A
1818 2 A 1819 2 U 1821 2 A 1822 2 A 1824 2 C 1841
2 C 1842 2 G 1849 2 G 1861 2 G 1862 2
4 1.74 1.74 101.0 -1.51 -0.46 18.7 80 10 2 3 2 2 0 0  C 1557 2 C 1558 2 C 1559 2 U 1560 2 G 1570 2 G
1571 2 C 1572 2 G 1573 2 C 1574 2 A 1607 2 C 1609
2 G 1610 2 G 1611 2 G 1612 2 U 1621 2 A 1623 2 C
1626 2 C 1627 2 C 1628 2 C 1629 2 A 1630 2 A 1663
2 A 1664 2 G 1665 2
5 1.63 1.63 110.8 -1.24 -0.46 14.7 80 8 1 3 1 1 2 0  G 1274 2 G 1275 2 U 1319 2 G 1320 2 G 1321 2 G
1322 2 U 1323 2 G 1324 2 U 1505 2 A 1506 2 A 1508
2 G 1510 2 U 1511 2 C 1512 2 U 1555 2 C 1557 2 C
1558 2 U 1560 2 C 1572 2 G 1573 2 C 1574 2 U 1616
2 G 1617 2 C 1618 2
6 1.75 2.00 118.7 -1.62 -0.53 17.8 72 10 4 4 3 4 2 0  G 7 2 U 9 2 G 10 2 A 11 2 G 600 2 G 601 2 G 602 2
A 604 2 G 623 2 C 624 2 C 1698 2 G 1702 2 C 1703
2 C 1704 2 A 1824 2 A 1825 2 DA 19 7 DA 21 7 DA
23 7 DA 25 7 DA 26 7
7 3.34 3.34 120.1 -1.16 -0.66 14.1 73 4 2 0 2 1 2 0  G 1097 2 C 1098 2 G 1099 2 C 1135 2 U 1136 2 U
1137 2 C 1138 2 G 1205 2 C 1206 2 G 1207 2 A 1209
2 G 1210 2 G 1211 2 C 1331 2 A 1353 2 U 1364 2 G
1365 2 A 1376 2 U 1377 2 A 1378 2 A 1379 2 A 1489
2 C 1683 2 C 1684 2 C 1687 2 C 1688 2 C 1689 2 A
1699 2 C 1700 2 C 1701 2 G 1702 2 A 1825 2 DA 19
7 DA 20 7 DA 21 7 G 337 z
8 2.03 2.27 135.8 -1.40 -0.50 19.8 75 13 5 1 5 1 3 0  U 686 2 C 687 2 U 688 2 A 861 2 A 862 2 U 863 2 A
865 2 U 866 2 G 867 2 G 868 2 A 870 2 A 916 2 U
917 2 A 1020 2
9 1.58 1.58 143.6 -0.80 -0.65 9.7 78 6 1 2 3 0 0 0  C 1231 2 U 1232 2 G 1233 2 C 1234 2 G 1235 2 G
1236 2 C 1237 2 U 1242 2 U 1243 2 U 1244 2 G 1245
2 A 1246 2 C 1247 2 U 1248 2 G 1257 2 A 1258 2 A
1259 2 C 1331 2 A 1489 2 G 1490 2 C 1518 2 U 1519
2 G 1520 2 A 1607 2 U 1608 2 C 1609 2 G 1610 2 G
1611 2 G 1612 2 U 1621 2 A 1623 2 U 1625 2 C 1626
2 C 1627 2 C 1628 2 C 1629 2 A 1630 2 U 1631 2 A
1633 2 G 1665 2 C 1701 2 G 1702 2 A 1825 2 DA 19
7 DA 20 7 DA 21 7
10 1.18 1.85 160.1 -1.39 -0.35 23.3 78 15 9 4 14 4 0 0  U 686 2 C 687 2 U 688 2 A 913 2 U 917 2 U 918 2
11 1.35 2.59 164.3 -0.82 -0.17 19.1 72 11 7 3 10 5 1 2  G 1097 2 C 1098 2 G 1099 2 C 1135 2 U 1136 2 U
1137 2 C 1138 2 G 1141 2 G 1142 2 C 1146 2 G 1349
2 U 1350 2 G 1351 2 G 1352 2 A 1353 2 G 1354 2 C
1355 2 G 1356 2 A 1378 2
12 1.59 1.59 167.4 -0.82 -0.59 9.7 77 5 3 2 3 3 1 0  G 1222 2 A 1223 2 G 1224 2 U 1225 2 C 1529 2 U
1530 2 A 1531 2 C 1532 2 C 1557 2 C 1558 2 C 1559
2 U 1560 2 G 1570 2 G 1571 2 C 1572 2 G 1573 2 C
1574 2 A 1637 2 G 1638 2 G 1652 2 U 1653 2 G 1654
2 C 1655 2 G 1656 2 G 1657 2 A 1663 2 A 1664 2 G
1665 2 C 1666 2 U 1667 2 G 49 z A 50 z G 51 z G
52 z A 54 z C 55 z U 56 z U 59 z G 60 z U 61 z C
69 z A 70 z G 100 z U 101 z G 102 z U 103 z C 104
z G 105 z U 106 z G 107 z C 108 z A 109 z
13 2.48 2.48 166.4 -0.59 -0.73 6.2 76 6 0 2 2 1 0 0  A 668 2 A 669 2 A 670 2 A 671 2 A 672 2 G 673 2 C
674 2 C 927 2 G 928 2 G 929 2 C 931 2 G 933 2 G
934 2 G 935 2 G 936 2 C 937 2 U 939 2 C 1000 2 A
1001 2 U 1002 2 U 1003 2 G 1005 2 C 1006 2 C 1007
2 A 1008 2 A 1009 2 G 1010 2 A 1028 2 A 1030 2 A
1031 2 C 1032 2 G 1033 2 A 1034 2 A 1035 2 C 1074
2 C 1075 2 A 1077 2 C 1078 2 C 1079 2 A 1080 2 U
1081 2 A 1082 2 A 1083 2 A 1087 2 G 1167 2 G 1168
2 G 1171 2 C 1185 2 U 1186 2 A 1196 2 G 1197 2 G
1702 2 C 1703 2 C 1704 2 C 1705 2 A 1822 2 A 1823
2 A 1824 2 A 1825 2 C 1842 2 G 1843 2 DA 19 7 DA
21 7
14 2.23 2.23 176.2 -0.58 -0.74 6.0 84 3 0 0 1 0 1 0  G 1205 2 C 1206 2 G 1207 2 A 1209 2 G 1210 2 C
1219 2 A 1220 2 G 1221 2 G 1222 2 A 1223 2 G 1224
2 U 1225 2 C 1331 2 A 1489 2 C 1529 2 U 1530 2 A
1531 2 C 1532 2 C 1557 2 C 1558 2 C 1559 2 U 1560
2 G 1570 2 G 1571 2 C 1572 2 G 1573 2 C 1574 2 A
1637 2 G 1638 2 G 1639 2 A 1640 2 A 1641 2 U 1642
2 G 1652 2 U 1653 2 G 1654 2 C 1655 2 G 1656 2 G
1657 2 A 1663 2 A 1664 2 G 1665 2 C 1666 2 U 1667
2 C 1684 2 U 1685 2 C 1687 2 C 1688 2 C 1689 2 A
1699 2 C 1700 2 C 1701 2 G 1702 2 A 1825 2 DA 19
7 DA 20 7 DA 21 7 A 81 z G 82 z C 338 z A 339 z
15 2.05 2.05 184.1 -0.92 -0.68 10.6 76 7 2 0 3 1 3 0  G 1097 2 C 1098 2 G 1099 2 C 1135 2 U 1136 2 U
1137 2 C 1138 2 G 1207 2 A 1209 2 G 1210 2 G 1211
2 C 1219 2 A 1220 2 G 1221 2 G 1222 2 A 1223 2 G
1224 2 U 1225 2 A 1353 2 U 1364 2 G 1365 2 A 1376
2 U 1377 2 A 1378 2 A 1379 2 C 1529 2 U 1530 2 A
1531 2 C 1532 2 C 1557 2 C 1558 2 C 1559 2 U 1560
2 G 1570 2 G 1571 2 C 1572 2 G 1573 2 C 1574 2 A
1637 2 G 1638 2 G 1639 2 A 1640 2 A 1641 2 U 1642
2 G 1652 2 U 1653 2 G 1654 2 C 1655 2 G 1656 2 G
1657 2 A 1663 2 A 1664 2 G 1665 2 C 1666 2 U 1667
2 C 1683 2 C 1684 2 U 1685 2 A 81 z G 82 z G 337
z C 338 z A 339 z
16 1.59 1.59 192.9 -0.82 -0.64 9.8 76 4 3 2 4 3 0 0  G 1205 2 C 1206 2 G 1207 2 A 1209 2 G 1210 2 C
1219 2 A 1220 2 G 1221 2 G 1222 2 C 1331 2 A 1489
2 A 1637 2 G 1638 2 G 1639 2 A 1640 2 A 1641 2 U
1642 2 C 1684 2 U 1685 2 C 1687 2 C 1688 2 C 1689
2 A 1699 2 C 1700 2 C 1701 2 G 1702 2 A 1825 2 DA
19 7 DA 20 7 DA 21 7 G 49 z A 50 z G 51 z G 52 z
A 54 z C 55 z U 56 z U 59 z G 60 z U 61 z C 69 z
A 70 z G 71 z A 81 z G 82 z G 88 z C 89 z G 94 z
G 100 z U 101 z G 102 z U 103 z C 104 z G 105 z U
106 z G 107 z C 108 z A 109 z C 338 z A 339 z
17 1.68 2.12 196.2 -1.59 -0.48 20.3 75 15 7 5 9 5 0 0  G 601 2 G 602 2 A 604 2 U 607 2 A 628 2 U 630 2 G
1274 2 G 1275 2 U 1319 2 G 1320 2 G 1321 2 G 1322
2 U 1323 2 G 1324 2 G 1497 2 U 1499 2 U 1505 2 A
1506 2 A 1508 2 G 1510 2 DA 28 7
18 1.29 2.31 213.5 -0.66 -0.39 14.5 81 12 9 6 15 2 2 0  C 1331 2 U 1347 2 G 1348 2 G 1349 2 G 1381 2 A
1382 2 A 1383 2 U 1485 2 A 1486 2 A 1487 2 C 1488
2 A 1489 2 C 1698 2 A 1699 2 C 1701 2 G 1702 2 A
1825 2 DA 19 7 DA 20 7 DA 21 7 DA 22 7 DA 24 7
19 1.49 1.49 218.5 -1.08 -0.60 13.2 76 10 5 2 6 4 2 0  G 1097 2 C 1098 2 G 1099 2 C 1135 2 U 1136 2 U
1137 2 C 1138 2 G 1207 2 A 1209 2 G 1210 2 G 1211
2 C 1219 2 A 1220 2 G 1221 2 G 1222 2 A 1353 2 U
1364 2 G 1365 2 A 1376 2 U 1377 2 A 1378 2 A 1379
2 A 1637 2 G 1638 2 G 1639 2 A 1640 2 A 1641 2 U
1642 2 C 1683 2 C 1684 2 U 1685 2 G 49 z A 50 z G
51 z G 52 z A 54 z C 55 z U 56 z U 59 z G 60 z U
61 z C 69 z A 70 z G 71 z A 81 z G 82 z G 88 z C
89 z G 94 z G 100 z U 101 z G 102 z U 103 z C 104
z G 105 z U 106 z G 107 z C 108 z A 109 z G 337 z
C 338 z A 339 z
20 1.38 2.50 242.7 -0.57 -0.37 13.0 81 12 9 9 16 2 3 0  U 9 2 G 10 2 A 11 2 G 623 2 C 624 2 U 1347 2 G
1348 2 G 1349 2 G 1381 2 A 1382 2 A 1383 2 C 1698
2 C 1703 2 C 1704 2 C 1705 2 G 1706 2 U 1707 2 C
1708 2 G 1709 2 C 1710 2 A 1818 2 A 1819 2 U 1821
2 A 1822 2 A 1823 2 A 1824 2 G 1849 2 DA 23 7 DA
25 7 DA 26 7 DA 27 7
21 1.70 1.70 253.8 -1.30 -0.47 18.6 81 20 11 5 10 4 1 0  C 1311 2 G 1312 2 U 1549 2 G 1550 2 G 1552 2 C
1553 2 C 1554 2 C 1557 2 C 1558 2 C 1559 2 U 1560
2 G 1570 2 A 1607 2 C 1609 2 G 1610 2 G 1611 2 G
1612 2 U 1621 2 A 1623 2 C 1626 2 C 1627 2 C 1628
2 C 1629 2 A 1630 2 G 1657 2 G 1658 2 C 1660 2 A
1663 2 A 1664 2 G 1665 2
22 1.19 3.28 255.8 -0.43 -0.44 9.6 81 11 4 2 13 2 0 0  C 357 2 C 358 2 U 359 2 U 361 2 C 362 2 U 366 2 U
367 2 C 369 2 G 403 2 G 404 2 G 405 2 U 406 2 A
408 2 G 410 2 G 413 2 A 414 2 U 416 2 C 417 2 A
418 2 G 419 2 U 422 2 U 423 2 C 424 2 G 425 2 G
466 2 G 467 2 U 815 2 C 850 2 U 1728 2 U 1729 2 U
1730 2 G 1732 2 U 1733 2 G 1734 2 A 1735 2 G 1736
2 G 1737 2 C 1738 2 G 1792 2 A 1793 2 C 1794 2 G
1795 2 G 1796 2 U 1797 2 G 1799 2 C 1807 2 U 1808
2 A 1809 2 U 1810 2
23 2.10 2.36 268.8 -1.46 -0.53 21.4 80 18 15 4 9 4 3 0  C 1311 2 G 1312 2 C 1331 2 C 1336 2 C 1337 2 U
1339 2 A 1483 2 A 1484 2 A 1487 2 C 1488 2 A 1489
2 C 1553 2 C 1554 2 C 1698 2 A 1699 2 C 1701 2 G
1702 2 A 1825 2 U 1827 2 DA 19 7 DA 20 7 DA 21 7
DA 22 7 DA 24 7
24 1.34 2.54 275.4 -0.52 -0.35 12.3 80 15 7 7 14 3 4 0  G 1381 2 A 1382 2 U 1390 2 C 1391 2 U 1392 2 G
1393 2 G 1394 2 A 1396 2 G 1428 2 C 1443 2 U 1444
2 U 1445 2 A 1446 2 A 1448 2 G 1449 2 A 1545 2 G
1546 2 C 1557 2 C 1558 2 C 1559 2 U 1560 2 A 1561
2 G 1570 2 G 1571 2 C 1572 2 G 1573 2 C 1574 2 U
1585 2 U 1586 2 G 1587 2 A 1588 2 C 1655 2 G 1656
2
25 1.33 2.52 291.5 -0.70 -0.33 15.7 80 17 12 8 22 4 2 0  U 607 2 A 628 2 G 1274 2 G 1275 2 U 1319 2 G 1320
2 G 1321 2 G 1322 2 U 1323 2 G 1324 2 G 1349 2 G
1381 2 A 1382 2 A 1383 2 G 1497 2 U 1499 2 U 1505
2 A 1506 2 A 1508 2 G 1510 2 DA 28 7
26 2.11 2.27 314.0 -1.46 -0.50 21.0 78 19 17 2 9 5 4 0  G 1097 2 C 1098 2 G 1099 2 C 1135 2 U 1136 2 U
1137 2 C 1138 2 A 1214 2 C 1215 2 C 1311 2 G 1312
2 A 1353 2 U 1364 2 G 1365 2 G 1366 2 U 1367 2 U
1368 2 A 1369 2 A 1376 2 U 1377 2 A 1378 2 A 1379
2 G 1387 2 A 1388 2 U 1390 2 C 1391 2 U 1392 2 G
1449 2 G 1450 2 G 1451 2 U 1477 2 U 1478 2 G 1479
2 A 1480 2 C 1553 2 C 1554 2 G 1680 2 U 1681 2 A
330 z A 332 z
27 1.29 1.66 314.5 -0.44 -0.51 8.2 78 12 2 3 13 3 0 0  C 362 2 A 363 2 A 364 2 C 365 2 U 366 2 U 367 2 C
369 2 G 403 2 G 404 2 G 466 2 G 467 2 C 927 2 G
928 2 G 929 2 C 931 2 G 933 2 G 934 2 G 935 2 G
936 2 C 937 2 U 939 2 C 1000 2 A 1001 2 U 1002 2
U 1003 2 G 1005 2 C 1006 2 C 1007 2 A 1008 2 A
1009 2 G 1010 2 G 1029 2 A 1030 2 A 1031 2 C 1032
2 G 1033 2 A 1034 2 A 1035 2 C 1074 2 C 1075 2 A
1077 2 C 1078 2 C 1079 2 A 1080 2 G 1176 2 U 1177
2 U 1178 2 G 1179 2 U 1728 2 U 1729 2 U 1730 2 G
1732 2 U 1733 2 G 1734 2 A 1735 2 G 1736 2 G 1737
2 C 1738 2 G 1792 2 A 1793 2 C 1794 2 G 1795 2 G
1796 2 U 1797 2 G 1799 2 C 1807 2 U 1808 2 A 1809
2
28 1.24 1.24 346.5 -0.68 -0.50 11.4 79 15 10 8 17 5 4 0  G 1207 2 A 1209 2 G 1210 2 G 1211 2 G 1212 2 C
1219 2 A 1220 2 G 1221 2 G 1222 2 U 1362 2 C 1363
2 U 1364 2 G 1365 2 U 1367 2 U 1371 2 C 1373 2 C
1374 2 G 1375 2 C 1380 2 G 1381 2 A 1637 2 G 1638
2 G 1639 2 A 1640 2 A 1641 2 U 1642 2 C 1683 2 C
1684 2 U 1685 2 C 1689 2 U 1690 2 A 50 z G 51 z G
52 z A 54 z C 55 z U 56 z U 59 z G 60 z U 61 z C
69 z A 70 z G 71 z A 81 z G 82 z G 88 z C 89 z G
94 z G 100 z U 101 z G 102 z U 103 z C 104 z G
105 z U 106 z G 107 z C 108 z A 109 z G 337 z C
338 z A 339 z
29 1.21 1.41 360.0 -0.91 -0.53 12.2 77 16 6 6 10 5 3 0  C 927 2 G 928 2 G 929 2 C 930 2 C 931 2 C 1006 2
C 1007 2 A 1008 2 A 1009 2 G 1010 2 U 1120 2 G
1207 2 A 1209 2 C 1219 2 A 1220 2 G 1221 2 G 1222
2 A 1223 2 G 1224 2 U 1225 2 C 1529 2 U 1530 2 A
1531 2 C 1532 2 C 1557 2 C 1558 2 C 1559 2 U 1560
2 G 1570 2 G 1571 2 C 1572 2 G 1573 2 C 1574 2 A
1637 2 G 1638 2 G 1639 2 A 1640 2 A 1641 2 U 1642
2 G 1652 2 U 1653 2 G 1654 2 C 1655 2 G 1656 2 G
1657 2 A 1663 2 A 1664 2 G 1665 2 C 1666 2 U 1667
2 C 1683 2 C 1684 2 U 1685 2 A 1869 2 A 81 z G 82
z G 263 z U 264 z G 266 z G 267 z C 293 z U 294 z
G 295 z G 301 z U 302 z G 303 z G 309 z C 333 z C
334 z U 336 z G 337 z C 338 z A 339 z
30 1.28 1.42 376.7 -0.96 -0.49 13.2 77 17 9 8 14 8 2 0  C 927 2 G 928 2 G 929 2 C 930 2 C 931 2 C 1006 2
C 1007 2 A 1008 2 A 1009 2 G 1010 2 U 1120 2 G
1207 2 A 1209 2 C 1219 2 A 1220 2 G 1221 2 G 1222
2 A 1637 2 G 1638 2 G 1639 2 A 1640 2 A 1641 2 U
1642 2 C 1683 2 C 1684 2 U 1685 2 A 1869 2 G 49 z
A 50 z G 51 z G 52 z A 54 z C 55 z U 56 z U 59 z
G 60 z U 61 z C 69 z A 70 z G 71 z A 81 z G 82 z
G 88 z C 89 z G 94 z G 100 z U 101 z G 102 z U
103 z C 104 z G 105 z U 106 z G 107 z C 108 z A
109 z U 262 z G 263 z U 264 z G 266 z G 267 z C
293 z U 294 z G 295 z G 301 z U 302 z G 303 z G
309 z C 333 z C 334 z U 336 z G 337 z C 338 z A
339 z

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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