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PDBsum entry 7rcd

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Top Page protein dna_rna metals pores links
Pore analysis for: 7rcd calculated with MOLE 2.0 PDB id
7rcd
Pores calculated on whole structure Pores calculated excluding ligands

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2 pores, coloured by radius 2 pores, coloured by radius 2 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.59 1.59 36.7 -1.27 -0.40 17.5 86 2 1 2 1 1 0 0  DG 3 B DC 4 B DC 19 C DA 20 C DT 21 C DG 22 C DC
26 C
2 1.40 1.40 131.9 -0.65 -0.43 6.1 85 3 0 3 1 1 0 0  DG 10 B DA 11 B DT 12 B DC 13 B DC 14 B DC 15 B D
A 16 B DC 17 B DA 18 B DG 19 B DG 20 B DC 21 B DG
22 B DC 23 B DC 1 C DC 2 C DG 3 C DG 11 C DG 12 C
DG 13 C DA 14 C DT 15 C DC 16 C DT 17 C DG 18 C
DC 19 C

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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