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PDBsum entry 7py3

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Top Page protein dna_rna metals Protein-protein interface(s) pores links
Pore analysis for: 7py3 calculated with MOLE 2.0 PDB id
7py3
Pores calculated on whole structure Pores calculated excluding ligands

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38 pores, coloured by radius 34 pores, coloured by radius 34 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.57 2.25 47.4 -1.16 -0.33 21.3 80 3 6 3 5 1 2 0  
2 1.12 1.20 56.5 -1.17 -0.50 13.2 85 3 2 5 3 1 0 0  DG 18 N
3 1.20 1.20 57.1 -1.93 -0.53 22.4 89 7 3 3 3 0 1 0  U 4 R C 5 R
4 1.17 2.56 70.2 0.15 -0.05 14.2 86 4 7 4 13 1 0 0  U 4 R C 5 R DG 24 T DC 25 T
5 3.68 3.67 71.4 -0.66 -0.44 11.9 89 4 4 3 8 0 1 0  DC 17 N DG 18 N DA 19 N U 4 R C 5 R DG 24 T DC 25
T DG 26 T DG 28 T DA 29 T DC 30 T
6 1.13 1.51 79.6 -1.24 -0.38 20.3 85 8 5 5 7 0 2 0  
7 1.16 2.56 89.2 -0.43 -0.24 13.2 86 7 8 4 13 1 1 0  DC 17 N DG 18 N DA 19 N DG 26 T DG 28 T DA 29 T
DC 30 T
8 1.19 3.04 127.1 -0.21 0.04 14.4 79 6 7 8 19 7 5 0  
9 1.34 1.59 127.2 -1.14 -0.12 20.3 86 13 9 8 18 5 1 0  U 4 R C 5 R
10 1.20 1.23 135.4 -1.33 -0.19 21.4 86 14 7 7 18 5 2 0  
11 1.75 2.01 150.2 -2.07 -0.66 23.5 82 14 12 9 5 2 7 0  DG 26 N DA 27 N U 4 R C 5 R C 8 R G 9 R G 10 R DG
16 T DA 17 T DC 18 T DC 20 T DG 21 T DC 22 T DC
23 T DG 24 T DC 25 T
12 1.73 2.12 154.6 -2.58 -0.71 28.0 83 17 12 7 2 1 6 0  DC 17 N DG 18 N DA 19 N DT 20 N DC 21 N DT 23 N
DC 24 N DG 25 N DG 26 N DA 27 N DT 12 T DT 13 T
DC 14 T DA 29 T DC 30 T
13 1.31 1.90 158.8 -1.17 -0.19 23.1 84 15 8 7 14 1 1 0  
14 1.37 1.55 173.4 -1.61 -0.46 23.0 81 14 10 6 9 1 6 0  DC 17 N DG 18 N DA 19 N DT 20 N DC 21 N DT 23 N
DC 24 N DG 25 N DG 26 N DA 27 N DT 12 T DT 13 T
DC 14 T DA 29 T DC 30 T
15 1.30 1.60 174.3 -1.14 -0.40 18.6 79 11 10 7 13 2 7 0  DG 26 N DA 27 N U 4 R C 5 R C 8 R G 9 R G 10 R DG
16 T DA 17 T DC 18 T DC 20 T DG 21 T DC 22 T DC
23 T DG 24 T DC 25 T
16 1.24 1.26 187.8 -1.81 -0.35 22.6 84 20 10 10 15 4 3 0  
17 1.13 2.86 184.9 -0.99 -0.20 17.6 79 12 9 7 14 7 8 0  DC 17 N DG 18 N DA 19 N DT 20 N DC 21 N DT 23 N
DC 24 N DG 25 N DG 26 N DA 27 N DT 12 T DT 13 T
DC 14 T DA 29 T DC 30 T
18 1.88 1.88 200.5 -2.08 -0.63 21.6 83 19 12 15 9 2 5 0  U 4 R C 5 R C 8 R G 9 R G 10 R G 14 R DA 17 T DC
18 T DC 20 T DG 21 T DC 22 T DC 23 T DG 24 T DC
25 T
19 1.89 1.89 207.7 -2.30 -0.64 23.8 84 20 14 16 8 1 5 0  DC 17 N DG 18 N DA 19 N DT 20 N G 9 R G 14 R DG
16 T DA 17 T DC 18 T DA 29 T DC 30 T
20 1.58 2.04 232.0 -2.46 -0.64 26.5 83 27 20 18 6 3 7 0  DG 26 N DA 27 N
21 1.03 1.24 237.9 -1.65 -0.55 22.1 86 12 21 17 14 4 1 0  
22 1.14 1.89 249.1 -1.40 -0.32 19.5 80 21 18 17 19 8 9 0  DG 26 N DA 27 N
23 1.23 1.24 248.0 -1.87 -0.57 24.4 85 18 16 14 10 4 3 0  DC 17 N DG 18 N DA 19 N DT 20 N DC 21 N DT 23 N
DC 24 N DG 25 N DG 26 N DA 27 N DT 12 T DT 13 T
DC 14 T DA 29 T DC 30 T
24 1.45 1.42 254.1 -1.54 -0.42 21.2 83 21 13 13 18 2 6 0  DC 17 N DG 18 N DA 19 N DT 20 N G 9 R G 14 R DG
16 T DA 17 T DC 18 T DA 29 T DC 30 T
25 1.45 1.41 278.5 -1.68 -0.43 23.4 82 28 19 15 16 4 8 0  DG 26 N DA 27 N
26 1.20 1.20 330.1 -1.68 -0.39 23.2 85 25 18 15 14 2 3 0  
27 1.49 1.49 78.4 0.44 -0.14 7.2 84 2 4 3 15 3 2 1  
28 1.18 1.28 115.3 -0.47 -0.39 11.7 80 5 5 3 11 3 3 0  
29 1.54 1.70 26.7 0.18 -0.31 4.7 88 0 2 0 4 2 0 0  
30 1.35 1.52 32.1 -0.36 -0.44 7.8 84 0 3 1 2 2 0 0  
31 1.76 1.82 35.2 -0.06 -0.35 6.0 82 0 2 1 1 3 0 0  
32 1.59 1.74 38.0 0.29 -0.16 6.4 86 2 2 3 8 0 1 0  
33 1.44 1.44 26.8 1.47 0.14 1.6 76 0 0 1 12 0 1 0  
34 1.78 3.01 25.7 0.93 -0.09 4.6 79 0 2 0 7 2 0 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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