PDBsum entry 7pmd Go to PDB code:  Pore analysis for: 7pmd calculated with MOLE 2.0 PDB id 7pmd Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   2 pores, coloured by radius 5 pores, coloured by radius 5 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.55 1.80 29.9 -1.67 -0.74 16.2 91 3 4 5 1 1 0 0  ANP 1901 A MG 1902 A MG 1903 A 2 1.54 3.39 33.0 -2.56 -0.28 32.6 78 3 6 0 1 1 1 0   3 2.13 2.32 43.6 -1.64 -0.32 27.6 81 7 3 2 4 1 0 0   4 1.24 1.38 88.6 -1.35 -0.40 18.6 86 7 5 8 4 2 0 1  ANP 1901 A MG 1902 A MG 1903 A 5 2.32 2.43 102.2 -1.69 -0.48 27.6 86 8 8 3 3 1 0 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.