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PDBsum entry 7pcx

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Top Page protein ligands metals Protein-protein interface(s) pores links
Pore analysis for: 7pcx calculated with MOLE 2.0 PDB id
7pcx
Pores calculated on whole structure Pores calculated excluding ligands

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13 pores, coloured by radius 14 pores, coloured by radius 14 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 3.32 4.45 40.2 -0.39 -0.11 13.7 77 4 4 0 4 3 4 0  OEH 301 B
2 3.20 5.21 48.1 -1.11 -0.28 23.1 80 3 8 0 6 2 0 0  OEH 301 B OEH 301 F
3 3.18 3.51 50.3 -0.71 -0.39 8.3 77 1 4 2 3 1 4 0  OEH 301 F
4 3.41 3.81 51.0 -0.70 -0.17 6.1 78 1 3 2 4 2 7 0  OEH 301 B
5 3.32 4.43 53.3 -1.21 -0.41 12.2 81 2 3 2 5 1 5 0  OEH 301 B
6 3.31 5.42 54.8 -1.38 -0.42 14.7 80 1 8 2 3 1 6 0  OEH 301 B
7 2.13 2.29 55.4 -0.64 -0.10 9.0 76 4 5 2 5 2 7 0  OEH 301 B
8 2.34 2.51 56.6 -1.47 -0.31 23.5 79 7 8 0 6 2 2 0  OEH 301 B
9 2.35 2.53 58.1 -1.68 -0.32 25.5 79 6 13 0 4 2 3 0  OEH 301 B
10 3.16 4.56 61.9 -1.02 -0.21 16.1 75 2 9 3 7 3 7 0  
11 1.15 1.20 78.2 -1.99 -0.59 24.7 80 4 13 6 4 1 3 0  
12 2.80 4.19 91.7 -0.90 -0.26 9.5 77 1 6 5 9 3 10 0  OEH 301 B
13 1.22 1.26 92.9 -1.40 -0.42 15.1 80 5 7 7 4 3 6 0  OEH 301 E
14 2.44 2.44 95.2 -1.08 -0.21 16.1 77 6 11 3 10 4 7 0  OEH 301 B

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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