spacer
spacer

PDBsum entry 7p2c

Go to PDB code: 
Top Page protein ligands metals Protein-protein interface(s) pores links
Pore analysis for: 7p2c calculated with MOLE 2.0 PDB id
7p2c
Pores calculated on whole structure Pores calculated excluding ligands

View options
MOLEonline 2.0 manipulation
and
visualization
with HETATM:
without HETATM:
 
0 pores, coloured by radius 8 pores, coloured by radius 8 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 2.70 5.03 26.1 -0.54 0.55 19.2 83 4 0 2 5 4 0 0  BCL 304 L BCL 305 L BPH 306 L BCL 405 M
2 1.22 2.92 26.1 1.10 0.96 9.3 62 2 0 0 5 5 0 0  BCL 404 M BCL 405 M BPH 406 M SPN 408 M
3 2.09 2.09 28.6 0.43 0.68 5.0 61 1 0 1 4 8 0 0  BCL 404 M BCL 405 M BPH 406 M SPN 408 M
4 1.20 3.01 35.8 -0.16 0.55 16.6 81 5 0 3 6 4 0 0  BCL 304 L BCL 404 M BCL 405 M
5 1.83 2.44 40.5 -0.27 0.59 17.0 80 5 0 3 7 4 0 0  BCL 304 L BCL 404 M BCL 405 M BPH 406 M SPN 408 M
6 1.21 2.93 41.3 0.98 0.87 9.4 73 4 0 1 9 7 0 0  BCL 304 L BCL 305 L BPH 306 L BCL 404 M BCL 405 M
7 2.70 4.29 46.0 0.79 0.86 9.9 74 4 0 1 10 7 0 0  BCL 304 L BCL 305 L BPH 306 L BCL 404 M BCL 405 M
BPH 406 M SPN 408 M
8 1.21 1.66 50.2 0.77 0.44 11.2 74 1 6 1 9 6 2 0  OLC 301 L BCL 404 M BCL 405 M BPH 406 M

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
spacer
spacer