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PDBsum entry 7orb

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Top Page protein ligands metals Protein-protein interface(s) pores links
Pore analysis for: 7orb calculated with MOLE 2.0 PDB id
7orb
Pores calculated on whole structure Pores calculated excluding ligands

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5 pores, coloured by radius 11 pores, coloured by radius 11 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 2.22 3.45 25.6 -2.51 -0.16 20.8 82 4 1 5 1 3 0 0  GOL 302 A GOL 501 H
2 2.90 3.49 37.2 -2.42 -0.60 22.4 85 3 2 5 1 0 2 0  
3 2.87 3.54 51.0 -2.64 -0.73 17.1 83 3 2 5 0 0 2 0  
4 2.33 3.05 56.9 -1.28 -0.40 6.0 94 1 2 13 3 2 0 0  GOL 302 A PO4 304 A
5 1.99 1.99 36.0 -1.92 -0.75 20.1 82 4 3 3 0 1 2 0  GOL 902 B
6 3.30 3.47 44.2 -1.43 -0.58 12.5 76 4 2 4 1 1 5 0  
7 1.91 1.91 51.4 -1.41 -0.64 12.5 83 4 2 2 0 0 4 0  BTB 404 E CL 407 E CL 408 E
8 1.92 1.91 74.0 -1.32 -0.61 17.0 85 3 5 5 4 0 3 0  BTB 404 E CL 407 E CL 408 E
9 2.48 2.49 75.2 -1.22 -0.52 13.8 81 2 5 5 5 0 4 0  BTB 404 E
10 1.59 2.25 41.1 0.68 0.04 5.0 74 0 1 1 6 4 0 0  NAG 1 G
11 1.55 1.60 63.1 1.04 0.23 6.3 75 0 1 1 5 4 0 0  NAG 1 J NAG 2 J

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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