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PDBsum entry 7oop
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Top Page protein dna_rna metals Protein-protein interface(s) pores links
Pore analysis for: 7oop calculated with MOLE 2.0 PDB id
7oop
Pores calculated on whole structure Pores calculated excluding ligands
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35 pores, coloured by radius 35 pores, coloured by radius 35 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 2.00 2.00 36.0 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  
2 2.09 2.09 62.2 -1.10 -0.59 15.9 78 4 3 2 1 2 1 0  DT 9 N UNK 13 R UNK 14 R UNK 16 R UNK 17 R UNK 19
R UNK 20 R UNK 23 R DG 30 T DC 32 T DT 33 T
3 3.78 3.78 73.4 -1.93 -0.43 19.8 79 6 4 7 2 2 2 0  DT 9 N DC 12 N DC 32 T DT 33 T DA 34 T DT 35 T
4 1.76 1.89 76.7 -1.01 -0.46 13.9 78 4 5 2 3 4 1 0  UNK 13 R UNK 14 R UNK 16 R UNK 17 R UNK 19 R UNK
20 R UNK 23 R
5 1.80 2.26 84.7 -1.56 -0.40 18.4 79 10 3 4 3 2 4 1  A 31 P C 32 P A 33 P
6 2.86 3.06 87.4 -0.46 -0.70 6.8 90 1 3 2 3 0 0 0  
7 2.10 2.10 99.7 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  
8 3.51 3.51 105.9 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  
9 1.54 1.86 116.5 -1.05 -0.23 18.3 80 14 6 7 12 4 2 2  
10 2.76 2.76 112.6 -0.50 -0.80 4.7 74 1 1 0 0 0 0 0  
11 1.81 2.05 115.7 -1.90 -0.50 23.4 77 8 7 3 2 3 3 0  UNK 14 R DG 30 T DC 32 T DT 33 T
12 1.56 1.78 119.5 -1.52 -0.34 20.5 83 15 9 9 11 3 2 0  DT 9 N A 31 P C 32 P A 33 P
13 2.10 2.11 118.4 -1.23 -0.37 16.0 77 7 5 7 3 4 1 0  DC 12 N UNK 13 R UNK 14 R UNK 16 R UNK 17 R UNK
19 R UNK 20 R UNK 23 R DT 33 T DA 34 T DT 35 T
14 1.69 1.77 126.5 -1.93 -0.52 19.4 84 9 6 8 6 3 3 0  
15 1.56 1.78 135.0 -0.85 -0.28 14.3 84 8 7 9 10 3 1 0  
16 1.22 1.76 144.9 -0.39 0.05 17.7 76 13 12 6 20 4 2 2  
17 1.40 1.45 150.3 -1.15 -0.36 15.8 84 13 10 17 7 3 2 0  
18 1.87 1.95 160.1 -1.45 -0.36 17.1 79 10 8 9 4 5 2 0  DC 12 N UNK 14 R DT 33 T DA 34 T DT 35 T
19 2.89 5.28 159.6 -2.18 -0.53 21.9 78 16 8 11 4 7 1 0  DC 12 N DA 13 N DA 15 N DT 16 N DC 29 N DG 31 N
DG 32 N DA 33 N DC 10 T DC 11 T DT 12 T DT 13 T
DC 14 T DT 15 T DT 33 T
20 1.78 2.12 170.1 -0.95 -0.32 19.3 82 16 10 6 14 2 1 2  
21 2.15 2.15 162.0 -0.38 -0.75 4.3 94 0 2 2 3 0 0 0  
22 2.12 2.12 161.4 -1.93 -0.60 20.4 78 14 10 9 3 6 2 0  DC 29 N DG 31 N DG 32 N DA 33 N UNK 13 R UNK 14 R
UNK 16 R UNK 17 R UNK 19 R UNK 20 R UNK 23 R DC
10 T DC 11 T DT 12 T DT 13 T DC 14 T DT 15 T DT
29 T DG 30 T DG 31 T
23 2.88 5.25 169.4 -2.13 -0.61 22.4 77 15 11 9 2 6 3 0  DT 9 N DC 29 N DG 31 N DG 32 N DA 33 N DC 10 T DC
11 T DT 12 T DT 13 T DC 14 T DT 15 T DT 29 T DG
30 T DG 31 T DC 32 T DT 33 T
24 2.19 2.19 177.8 -0.45 -0.80 4.1 74 1 1 0 0 0 0 0  
25 1.83 2.34 183.4 -1.67 -0.51 20.9 82 20 8 8 7 3 4 1  DC 29 N DG 31 N DG 32 N DA 33 N A 33 P A 34 P A
35 P A 36 P U 37 P C 38 P G 39 P A 40 P G 41 P A
42 P DC 10 T DC 11 T DT 12 T DT 13 T DT 15 T DC
18 T DA 19 T DT 25 T DC 26 T
26 1.38 1.35 210.9 -2.01 -0.47 24.0 81 15 13 13 8 5 2 1  
27 2.05 2.41 214.1 -1.02 -0.35 19.3 85 20 16 9 13 2 4 0  DT 9 N A 33 P A 34 P A 35 P A 36 P
28 1.23 1.84 258.5 -1.84 -0.41 22.8 82 24 19 14 14 6 5 1  
29 1.26 1.78 325.8 -2.06 -0.47 23.1 81 35 20 23 10 8 5 1  DA 35 N DA 36 N DT 9 T DC 10 T
30 1.39 1.73 459.1 -0.96 -0.35 17.7 81 33 24 18 36 6 3 3  
31 2.12 2.12 25.4 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  
32 1.83 1.83 28.5 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  DC 3 T
33 2.00 2.00 28.5 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  
34 2.52 2.53 29.9 -0.75 -0.52 8.4 63 1 1 0 1 1 0 0  
35 2.53 2.54 42.2 -0.65 -0.60 6.8 63 1 1 0 1 1 0 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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