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PDBsum entry 7ocs

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Top Page protein ligands metals Protein-protein interface(s) pores links
Pore analysis for: 7ocs calculated with MOLE 2.0 PDB id
7ocs
Pores calculated on whole structure Pores calculated excluding ligands

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23 pores, coloured by radius 22 pores, coloured by radius 22 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.82 1.93 28.0 -2.01 -0.41 21.3 81 5 2 4 0 3 0 0  PG4 809 A EDO 803 D
2 1.76 1.95 30.7 -0.88 0.13 16.5 83 7 1 4 3 2 0 0  PGE 808 A
3 1.25 1.25 42.6 -1.34 -0.49 22.9 84 4 7 4 3 1 0 0  44H 808 D
4 1.86 1.86 46.2 -1.26 -0.50 13.9 78 4 6 4 3 2 1 0  
5 1.84 1.90 54.0 -2.08 -0.43 24.1 82 8 6 6 1 3 0 0  PGE 807 A PG4 809 A EDO 803 D
6 1.12 2.24 56.3 -1.74 -0.40 18.3 80 5 7 5 4 2 1 0  
7 1.88 1.89 57.8 -1.75 -0.59 18.6 80 3 7 7 3 2 1 0  
8 1.87 2.06 69.6 -1.43 -0.48 16.4 79 8 6 5 4 3 2 0  
9 1.81 4.17 70.6 -1.51 -0.34 21.3 78 5 6 4 6 2 2 0  EDO 803 B
10 1.19 1.77 70.3 -1.18 -0.09 17.3 86 8 5 9 6 2 0 0  PG4 809 A
11 1.91 2.01 74.9 -1.86 -0.45 20.4 78 4 7 3 3 3 1 0  EDO 806 A
12 1.67 2.78 85.6 -1.91 -0.35 22.8 82 12 6 9 5 3 2 0  PG4 809 A
13 1.20 1.73 87.3 -1.49 -0.41 18.5 82 7 10 9 7 3 2 0  
14 1.88 4.08 89.2 -2.10 -0.38 24.4 77 10 10 3 5 5 1 0  EDO 806 A EDO 803 B
15 1.82 4.12 90.7 -2.39 -0.56 27.6 80 9 9 6 5 2 1 0  EDO 803 B
16 1.88 2.12 95.3 -1.82 -0.46 19.6 80 9 10 8 4 3 2 0  PGE 807 A
17 1.19 1.88 96.8 -1.46 -0.37 15.3 79 7 11 9 7 4 3 0  
18 1.89 2.14 99.8 -1.48 -0.43 17.9 78 10 9 7 7 4 2 0  EDO 803 B
19 1.36 1.72 104.0 -2.02 -0.63 25.2 84 11 10 9 4 2 1 0  EDO 803 B CL 812 B 44H 814 B
20 1.29 1.75 107.3 -1.36 -0.38 16.7 82 7 13 10 7 3 1 0  PGE 807 A
21 1.20 1.73 113.3 -1.92 -0.35 22.4 81 15 10 11 8 3 3 0  PGE 808 A
22 1.93 2.18 116.2 -1.90 -0.48 23.1 80 8 13 5 5 4 0 0  EDO 806 A PGE 807 A

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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