PDBsum entry 7ocd Go to PDB code:  Tunnel analysis for: 7ocd calculated with MOLE 2.0 PDB id 7ocd Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   5 tunnels, coloured by tunnel radius 9 tunnels, coloured by tunnel radius 9 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.22 1.62 18.4 1.77 1.25 0.9 78 0 0 1 6 4 0 0  PC1 902 B 2 1.23 1.69 21.8 1.75 1.15 0.9 73 0 0 1 6 4 0 0  PC1 902 D 3 1.23 1.53 22.2 1.88 1.15 0.9 77 0 0 1 8 4 0 0  PC1 902 D 4 1.46 2.39 26.0 0.53 0.38 1.7 71 0 0 2 5 6 1 0   5 1.41 1.63 21.3 0.25 0.28 2.1 72 0 0 0 2 3 1 0   6 1.21 3.49 25.5 0.39 0.43 1.9 70 0 0 0 5 3 1 0   7 1.42 1.63 21.2 0.25 0.28 2.1 72 0 0 0 2 3 1 0   8 1.21 3.48 25.4 0.39 0.43 1.9 70 0 0 0 5 3 1 0   9 1.44 1.44 26.6 0.65 0.42 1.7 72 0 0 2 7 6 1 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.