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PDBsum entry 7o5h
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Top Page protein dna_rna metals Protein-protein interface(s) pores links
Pore analysis for: 7o5h calculated with MOLE 2.0 PDB id
7o5h
Pores calculated on whole structure Pores calculated excluding ligands
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30 pores, coloured by radius 30 pores, coloured by radius 30 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.21 1.50 41.9 -2.19 -0.55 26.3 75 3 2 1 2 1 0 0  C 1096 A C 1097 A C 1098 A
2 3.74 3.74 46.5 -0.73 -0.77 7.4 79 3 0 0 0 0 0 0  G 664 A A 665 A G 666 A G 667 A G 668 A G 669 A G
670 A G 671 A U 672 A A 673 A A 712 A G 713 A G
714 A A 715 A A 716 A G 733 A G 734 A C 736 A C
737 A U 740 A C 806 A G 846 A MG 1688 A
3 2.68 2.68 56.0 -0.85 -0.77 8.9 81 2 1 1 0 0 0 0  A 573 A A 574 A C 857 A C 866 A G 867 A G 887 A G
888 A A 889 A G 890 A U 891 A U 916 A G 917 A A
918 A A 919 A A 1394 A A 1508 A C 1509 A C 1510 A
G 1511 A U 1512 A G 1529 A G 1530 A MG 1605 A MG
1748 A
4 1.75 1.76 57.6 -1.83 -0.68 21.0 79 5 4 2 2 1 0 0  U 1085 A C 1096 A C 1097 A C 1098 A G 1099 A C
1100 A C 1103 A G 1104 A A 1105 A G 1106 A
5 2.21 2.21 59.2 -0.74 -0.76 7.7 77 4 0 0 0 0 0 0  G 664 A A 665 A G 666 A G 667 A G 668 A G 669 A G
670 A G 730 A C 732 A G 733 A G 734 A C 736 A C
737 A U 740 A G 763 A C 764 A G 765 A A 766 A A
767 A C 806 A A 807 A G 809 A C 810 A C 811 A G
812 A G 846 A G 898 A C 899 A MG 1648 A MG 1652 A
MG 1688 A MG 1718 A MG 1759 A
6 2.34 2.34 71.8 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  A 573 A A 574 A G 575 A C 576 A G 577 A G 761 A U
762 A G 763 A G 765 A G 809 A C 810 A C 811 A G
812 A U 813 A A 814 A A 815 A C 857 A C 866 A G
867 A G 887 A G 890 A C 897 A G 898 A C 899 A U
904 A U 905 A U 916 A G 917 A A 918 A A 919 A A
1394 A A 1508 A C 1509 A C 1510 A G 1511 A G 1529
A G 1530 A MG 1605 A MG 1611 A MG 1687 A MG 1699
A MG 1759 A
7 1.27 1.27 74.1 -1.33 -0.72 13.2 80 5 1 2 0 0 1 0  C 23 A A 573 A A 574 A U 884 A G 885 A G 886 A G
887 A G 888 A A 889 A G 890 A U 891 A A 908 A A
909 A C 910 A U 911 A C 912 A C 1510 A G 1511 A U
1512 A MG 1680 A MG 1748 A
8 2.62 2.62 79.6 -0.58 -0.65 8.0 89 4 1 2 3 0 0 0  G 568 A C 569 A U 723 A G 727 A A 729 A G 818 A G
821 A U 822 A C 823 A U 854 A U 855 A C 856 A C
857 A G 861 A C 862 A U 863 A C 868 A U 871 A A
872 A A 873 A G 874 A U 875 A C 876 A G 877 A U
1528 A G 1529 A
9 1.54 1.54 79.6 -1.00 -0.77 11.3 77 2 1 0 0 0 0 0  A 1 A U 30 A A 44 A G 45 A G 57 A C 58 A C 295 A
A 306 A C 307 A C 308 A C 355 A A 356 A A 366 A U
368 A G 369 A C 370 A A 371 A G 388 A U 390 A G
391 A C 392 A C 400 A C 612 A C 613 A C 614 A G
615 A G 616 A A 621 A A 622 A C 623 A C 624 A MG
1707 A
10 1.26 1.27 80.5 -0.79 -0.69 8.7 82 5 0 1 2 0 1 0  C 23 A G 242 A A 243 A U 244 A U 562 A G 760 A G
761 A U 762 A G 763 A G 765 A G 809 A C 810 A C
811 A G 812 A G 885 A G 895 A C 896 A C 897 A G
898 A C 899 A G 903 A U 904 A U 905 A A 906 A A
907 A A 908 A A 909 A C 910 A U 911 A C 912 A MG
1680 A MG 1759 A
11 3.06 3.06 80.4 -1.12 -0.70 13.3 74 3 1 0 1 1 1 0  A 665 A G 669 A G 670 A G 671 A U 672 A A 673 A A
712 A G 713 A G 714 A A 715 A A 716 A U 717 A G
722 A U 723 A G 724 A G 725 A C 726 A C 732 A G
733 A C 805 A C 806 A G 818 A U 855 A C 856 A C
857 A G 867 A C 868 A G 1525 A U 1528 A G 1529 A
12 1.31 1.36 82.4 -0.82 -0.76 7.3 80 3 0 1 0 0 1 0  C 23 A A 573 A A 574 A C 857 A C 866 A G 867 A U
884 A G 885 A G 886 A G 887 A G 888 A A 889 A G
890 A A 908 A A 909 A C 910 A U 911 A C 912 A U
916 A G 917 A A 918 A A 919 A A 1394 A A 1508 A C
1509 A C 1510 A G 1529 A G 1530 A MG 1605 A MG
1680 A
13 2.01 2.10 83.2 -2.00 -0.64 21.2 82 6 3 4 1 1 0 0  A 860 A G 861 A G 922 A G 1068 A C 1069 A U 1070
A C 1071 A G 1072 A U 1075 A U 1076 A G 1077 A U
1078 A A 1081 A A 1082 A U 1083 A G 1084 A U 1085
A U 1086 A U 1095 A C 1096 A A 1105 A G 1106 A C
1107 A G 1108 A MG 1639 A
14 3.18 3.46 84.4 -0.85 -0.51 8.4 82 3 4 4 5 2 2 0  U 4 A U 5 A A 7 A G 299 A U 565 A G 566 A G 601 A
A 602 A U 603 A G 604 A U 605 A G 606 A A 608 A G
628 A A 629 A A 630 A C 631 A U 632 A G 861 A C
862 A MG 1674 A MG 1693 A
15 1.25 1.30 86.9 -1.41 -0.74 13.8 80 5 1 1 0 0 1 0  A 1 A C 23 A U 24 A C 25 A A 26 A G 27 A A 28 A U
29 A U 30 A C 295 A C 400 A G 524 A G 550 A U 551
A U 552 A A 553 A A 554 A C 612 A C 613 A C 614 A
G 615 A G 616 A A 621 A A 622 A C 623 A C 910 A U
911 A C 912 A A 913 A
16 1.42 1.41 89.0 -0.92 -0.42 9.4 79 4 2 4 6 2 2 0  A 1 A A 2 A A 3 A U 4 A U 5 A A 7 A G 299 A U 565
A G 566 A C 614 A G 615 A G 861 A C 862 A
17 2.81 2.81 94.7 -0.40 -0.67 4.2 72 0 0 0 0 0 0 0  A 1 A A 2 A A 3 A U 4 A U 5 A A 238 A U 239 A G
240 A G 241 A G 242 A A 243 A U 244 A G 281 A G
292 A G 293 A U 294 A G 297 A G 299 A A 300 A G
301 A G 302 A A 303 A C 611 A C 614 A G 615 A A
630 A U 632 A A 759 A G 760 A G 761 A U 762 A G
763 A G 765 A G 809 A C 810 A C 811 A G 812 A C
882 A G 895 A C 896 A C 897 A G 898 A C 899 A G
903 A U 904 A U 905 A A 906 A MG 1698 A MG 1702 A
MG 1759 A
18 1.46 1.46 96.9 -1.19 -0.71 12.8 83 4 3 3 1 1 0 0  A 1 A G 202 A A 448 A G 449 A G 450 A A 452 A G
453 A G 454 A G 455 A A 456 A G 457 A U 458 A C
470 A U 471 A U 472 A U 473 A G 474 A C 475 A U
476 A C 614 A G 615 A G 616 A G 617 A C 618 A U
619 A C 620 A A 621 A MG 1631 A MG 1632 A MG 1696
A MG 1755 A
19 2.61 2.61 110.4 -0.61 -0.74 7.1 86 0 0 0 0 0 0 0  A 1 A A 2 A A 3 A U 4 A U 5 A U 239 A G 240 A G
241 A G 242 A U 291 A G 292 A G 293 A U 294 A G
297 A G 299 A A 300 A G 302 A A 303 A U 304 A U
562 A A 573 A A 574 A C 611 A C 614 A G 615 A A
630 A U 632 A U 884 A G 885 A G 886 A G 887 A G
888 A A 889 A G 890 A U 891 A A 907 A A 908 A C
1510 A G 1511 A U 1512 A MG 1698 A MG 1702 A MG
1748 A
20 1.32 1.33 116.5 -0.95 -0.64 10.6 80 8 2 1 3 0 3 0  C 23 A A 238 A U 239 A G 240 A G 241 A G 242 A G
301 A G 302 A A 303 A U 562 A U 598 A C 599 A G
601 A A 602 A U 603 A G 604 A U 605 A G 606 A A
608 A G 628 A A 629 A A 630 A C 631 A U 632 A G
633 A C 634 A A 635 A G 885 A A 907 A A 908 A A
909 A C 910 A U 911 A C 912 A MG 1674 A MG 1680 A
MG 1693 A MG 1723 A
21 2.89 2.89 117.3 -1.19 -0.61 15.7 79 7 4 0 4 3 2 0  G 664 A A 665 A G 666 A G 667 A G 668 A G 669 A G
670 A A 716 A U 717 A G 722 A U 723 A G 724 A G
725 A C 726 A C 732 A G 733 A G 734 A C 736 A C
737 A U 740 A C 805 A C 806 A G 818 A U 855 A C
856 A C 857 A G 867 A C 868 A G 1525 A U 1528 A G
1529 A MG 1648 A MG 1688 A MG 201 F
22 2.81 2.81 123.9 -0.77 -0.47 8.7 79 5 2 3 6 2 4 0  A 7 A A 238 A U 239 A G 240 A G 241 A G 242 A A
243 A U 244 A G 281 A G 299 A A 300 A G 301 A G
302 A U 565 A G 566 A U 632 A G 633 A A 759 A G
760 A G 761 A U 762 A G 763 A G 765 A G 809 A C
810 A C 811 A G 812 A G 861 A C 862 A C 882 A G
895 A C 896 A C 897 A G 898 A C 899 A G 903 A U
904 A U 905 A A 906 A MG 1759 A
23 1.20 1.24 128.5 -0.92 -0.45 10.6 80 9 2 4 8 2 5 0  A 7 A C 23 A A 238 A U 239 A G 240 A G 241 A G
242 A G 299 A A 300 A G 301 A G 302 A A 303 A U
562 A U 565 A G 566 A U 632 A G 633 A G 861 A C
862 A G 885 A A 907 A A 908 A A 909 A C 910 A U
911 A C 912 A MG 1680 A
24 2.58 2.71 132.8 -0.70 -0.65 6.5 73 3 3 2 1 2 2 0  U 4 A U 5 A A 7 A G 299 A U 565 A G 566 A G 567 A
G 568 A C 569 A G 601 A A 602 A U 603 A G 604 A U
605 A G 606 A A 608 A G 628 A A 629 A A 630 A C
631 A U 632 A U 723 A G 727 A A 729 A G 818 A G
821 A U 822 A C 823 A U 854 A U 855 A C 856 A C
857 A G 867 A C 868 A U 871 A A 872 A A 873 A G
874 A U 875 A C 876 A G 877 A U 1528 A G 1529 A
MG 1674 A MG 1693 A
25 1.56 1.56 133.6 -0.74 -0.54 7.1 81 3 1 4 5 2 2 0  U 4 A U 5 A G 6 A A 7 A U 30 A A 44 A G 45 A G 57
A C 58 A C 295 A U 296 A G 297 A G 299 A A 300 A
A 306 A C 307 A C 308 A C 355 A A 356 A A 366 A U
368 A G 369 A C 370 A A 371 A G 388 A U 390 A G
391 A C 392 A C 400 A U 565 A G 566 A C 611 A C
612 A C 623 A C 624 A A 630 A U 632 A G 861 A C
862 A MG 1666 A MG 1698 A MG 1707 A MG 1724 A
26 2.66 2.66 136.8 -0.88 -0.62 11.5 86 7 4 3 5 2 1 0  G 568 A C 569 A A 655 A G 656 A U 657 A C 658 A U
659 A C 660 A G 661 A U 662 A G 664 A C 744 A G
745 A U 822 A C 823 A G 824 A A 825 A G 852 A C
853 A G 861 A C 862 A U 863 A U 871 A A 872 A A
873 A G 874 A U 875 A C 876 A G 877 A MG 1648 A
MG 1710 A MG 201 F
27 1.42 1.44 137.4 -0.76 -0.60 7.3 70 4 1 2 2 2 2 0  A 1 A A 2 A A 3 A U 4 A U 5 A A 7 A G 299 A U 565
A G 566 A G 567 A G 568 A C 569 A C 614 A G 615 A
U 723 A G 727 A A 729 A G 818 A G 821 A U 822 A C
823 A U 854 A U 855 A C 856 A C 857 A G 867 A C
868 A U 871 A A 872 A A 873 A G 874 A U 875 A C
876 A G 877 A U 1528 A G 1529 A
28 2.61 2.79 155.9 -0.86 -0.68 7.7 76 5 3 3 0 2 2 0  U 4 A U 5 A A 7 A G 299 A U 565 A G 566 A G 567 A
G 568 A C 569 A G 601 A A 602 A U 603 A G 604 A U
605 A G 606 A A 608 A G 628 A A 629 A A 630 A C
631 A U 632 A A 655 A G 656 A U 657 A C 658 A U
659 A C 660 A G 661 A U 662 A G 664 A C 744 A G
745 A U 822 A C 823 A G 824 A A 825 A G 846 A G
852 A C 853 A U 871 A A 872 A A 873 A G 874 A U
875 A C 876 A G 877 A MG 1648 A MG 1674 A MG 1693
A MG 1710 A MG 1753 A
29 1.40 1.32 206.4 -0.68 -0.68 8.1 84 6 1 2 3 0 1 0  C 23 A A 50 A C 52 A A 53 A C 54 A A 55 A U 56 A
G 57 A C 58 A A 59 A G 61 A U 62 A A 101 A G 102
A A 116 A G 117 A C 163 A G 241 A G 242 A U 287 A
A 288 A U 304 A U 317 A A 338 A C 339 A U 340 A C
341 A A 349 A G 350 A G 359 A U 368 A G 369 A C
370 A A 371 A C 386 A U 562 A G 885 A A 907 A A
908 A A 909 A C 910 A U 911 A C 912 A MG 1621 A
MG 1680 A
30 1.31 1.31 232.2 -1.10 -0.69 12.0 82 13 1 3 3 0 2 0  C 23 A A 120 A U 121 A G 148 A A 149 A U 150 A G
164 A G 165 A U 166 A A 167 A C 176 A G 177 A C
178 A A 179 A U 180 A C 194 A A 195 A G 237 A U
239 A G 241 A G 242 A A 243 A U 252 A G 260 A C
267 A U 268 A C 277 A G 278 A G 281 A A 282 A U
283 A C 284 A A 320 A A 321 A C 334 A C 335 A U
562 A G 885 A A 907 A A 908 A A 909 A C 910 A U
911 A C 912 A MG 1642 A MG 1680 A MG 1694 A

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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