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PDBsum entry 7o5h
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Top Page protein dna_rna metals Protein-protein interface(s) tunnels links
Tunnel analysis for: 7o5h calculated with MOLE 2.0 PDB id
7o5h
Tunnels calculated on whole structure Tunnels calculated excluding ligands
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56 tunnels, coloured by tunnel radius 24 tunnels, coloured by tunnel radius 24 tunnels, coloured as in
list below
Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.
Tunnels
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.23 1.24 60.5 -1.48 -0.66 13.3 80 5 3 2 1 1 1 0  A 716 A U 717 A C 719 A G 722 A A 767 A A 768 A G
769 A C 770 A A 781 A A 802 A G 803 A U 804 A C
805 A A 1513 A G 1523 A C 1524 A G 1525 A MG 1712
A
2 1.24 1.24 61.2 -0.75 -0.76 7.5 82 3 0 1 0 0 0 0  G 668 A G 730 A C 732 A G 763 A C 764 A G 765 A A
766 A A 767 A A 768 A G 769 A C 770 A A 781 A A
802 A G 803 A U 804 A C 805 A C 806 A A 807 A G
809 A C 810 A A 1513 A G 1523 A C 1524 A G 1525 A
MG 1652 A MG 1718 A
3 1.26 1.26 63.2 -1.43 -0.66 13.2 80 6 3 1 1 1 1 0  A 716 A U 717 A C 719 A G 722 A A 767 A A 768 A G
769 A C 770 A A 781 A A 782 A A 802 A G 803 A U
804 A C 805 A A 1513 A G 1514 A G 1523 A C 1524 A
G 1525 A MG 1712 A
4 1.23 1.23 62.5 -0.68 -0.77 6.4 75 2 0 1 0 1 0 0  G 669 A G 670 A G 671 A U 672 A G 714 A A 715 A A
716 A C 732 A G 733 A A 767 A A 768 A G 769 A C
770 A G 774 A A 781 A A 802 A G 803 A U 804 A C
805 A C 806 A A 1513 A G 1523 A C 1524 A G 1525 A
5 1.23 1.23 62.8 -1.43 -0.67 13.2 80 6 3 1 1 1 1 0  A 716 A U 717 A C 719 A G 722 A A 767 A A 768 A G
769 A C 770 A A 781 A A 782 A A 802 A G 803 A U
804 A C 805 A A 1513 A G 1514 A G 1523 A C 1524 A
G 1525 A MG 1712 A
6 1.21 1.21 63.5 -0.74 -0.76 7.7 82 4 0 0 0 0 0 0  G 668 A G 730 A C 732 A G 763 A C 764 A G 765 A A
766 A A 767 A A 768 A G 769 A C 770 A A 781 A A
782 A A 802 A G 803 A U 804 A C 805 A C 806 A A
807 A G 809 A C 810 A A 1513 A G 1514 A G 1523 A
C 1524 A G 1525 A MG 1652 A MG 1718 A
7 1.24 1.24 63.8 -0.71 -0.76 7.3 82 4 0 0 0 0 0 0  G 668 A G 730 A C 732 A G 763 A C 764 A G 765 A A
766 A A 767 A A 768 A G 769 A C 770 A A 781 A A
782 A A 802 A G 803 A U 804 A C 805 A C 806 A A
807 A G 809 A C 810 A A 1513 A G 1514 A G 1523 A
C 1524 A G 1525 A MG 1652 A MG 1718 A
8 1.20 1.20 64.8 -0.64 -0.77 6.1 74 3 0 0 0 1 0 0  G 669 A G 670 A G 671 A U 672 A G 714 A A 715 A A
716 A C 732 A G 733 A A 767 A A 768 A G 769 A C
770 A G 774 A A 781 A A 782 A A 802 A G 803 A U
804 A C 805 A C 806 A A 1513 A G 1514 A G 1523 A
C 1524 A G 1525 A
9 1.24 1.24 65.2 -0.62 -0.77 5.9 74 3 0 0 0 1 0 0  G 669 A G 670 A G 671 A U 672 A G 714 A A 715 A A
716 A C 732 A G 733 A A 767 A A 768 A G 769 A C
770 A G 774 A A 781 A A 782 A A 802 A G 803 A U
804 A C 805 A C 806 A A 1513 A G 1514 A G 1523 A
C 1524 A G 1525 A
10 1.24 1.24 70.9 -0.83 -0.78 5.4 93 1 0 3 0 0 0 0  G 668 A G 730 A C 732 A A 766 A A 767 A A 768 A G
769 A C 770 A G 771 A U 772 A G 773 A G 774 A G
775 A G 776 A A 781 A A 802 A G 803 A U 804 A C
805 A C 806 A C 808 A G 809 A C 810 A A 1513 A G
1523 A C 1524 A G 1525 A MG 1715 A MG 1726 A MG
1739 A
11 1.24 1.24 73.5 -0.77 -0.78 5.3 93 2 0 2 0 0 0 0  G 668 A G 730 A C 732 A A 766 A A 767 A A 768 A G
769 A C 770 A G 771 A U 772 A G 773 A G 774 A G
775 A G 776 A A 781 A A 782 A A 802 A G 803 A U
804 A C 805 A C 806 A C 808 A G 809 A C 810 A A
1513 A G 1514 A G 1523 A C 1524 A G 1525 A MG
1715 A MG 1726 A MG 1739 A
12 1.26 1.25 73.1 -0.78 -0.78 5.3 93 2 0 2 0 0 0 0  G 668 A G 730 A C 732 A A 766 A A 767 A A 768 A G
769 A C 770 A G 771 A U 772 A G 773 A G 774 A G
775 A G 776 A A 781 A A 782 A A 802 A G 803 A U
804 A C 805 A C 806 A C 808 A G 809 A C 810 A A
1513 A G 1514 A G 1523 A C 1524 A G 1525 A MG
1641 A MG 1715 A MG 1726 A MG 1739 A
13 1.22 1.22 78.1 -1.17 -0.68 14.3 82 4 1 1 2 0 1 0  A 665 A A 716 A U 717 A G 722 A U 723 A G 724 A G
725 A C 726 A C 732 A G 733 A A 767 A A 768 A G
769 A C 770 A A 781 A A 802 A G 803 A U 804 A C
805 A G 818 A U 855 A C 856 A A 1513 A G 1523 A C
1524 A G 1525 A U 1528 A G 1529 A G 1530 A
14 1.22 1.22 80.4 -1.10 -0.67 13.8 78 5 1 0 2 1 1 0  A 665 A A 716 A U 717 A G 722 A U 723 A G 724 A G
725 A C 726 A C 732 A G 733 A A 767 A A 768 A G
769 A C 770 A A 781 A A 782 A A 802 A G 803 A U
804 A C 805 A G 818 A U 855 A C 856 A A 1513 A G
1514 A G 1523 A C 1524 A G 1525 A U 1528 A G 1529
A G 1530 A
15 1.26 1.26 80.8 -1.09 -0.68 13.6 81 5 1 0 2 0 1 0  A 665 A A 716 A U 717 A G 722 A U 723 A G 724 A G
725 A C 726 A C 732 A G 733 A A 767 A A 768 A G
769 A C 770 A A 781 A A 782 A A 802 A G 803 A U
804 A C 805 A G 818 A U 855 A C 856 A A 1513 A G
1514 A G 1523 A C 1524 A G 1525 A U 1528 A G 1529
A G 1530 A
16 1.21 1.21 82.3 -1.02 -0.63 7.0 72 3 1 2 0 1 4 0  A 676 A U 677 A U 678 A C 679 A G 690 A G 691 A A
716 A U 717 A A 767 A A 768 A G 769 A C 770 A A
777 A G 778 A C 779 A A 781 A G 799 A G 800 A A
802 A G 803 A U 804 A C 805 A A 1513 A G 1523 A C
1524 A G 1525 A
17 1.20 1.20 84.6 -1.01 -0.62 6.9 72 4 1 1 0 1 4 0  A 676 A U 677 A U 678 A C 679 A G 690 A G 691 A A
716 A U 717 A A 767 A A 768 A G 769 A C 770 A A
777 A G 778 A C 779 A A 781 A A 782 A G 799 A G
800 A A 802 A G 803 A U 804 A C 805 A A 1513 A G
1514 A G 1523 A C 1524 A G 1525 A
18 1.29 1.29 84.9 -1.04 -0.62 7.4 72 4 1 1 0 1 4 0  A 676 A U 677 A U 678 A C 679 A G 690 A G 691 A A
716 A U 717 A A 767 A A 768 A G 769 A C 770 A A
777 A G 778 A C 779 A A 781 A A 782 A G 799 A G
800 A A 802 A G 803 A U 804 A C 805 A A 1513 A G
1514 A G 1523 A C 1524 A G 1525 A
19 1.23 1.23 88.0 -0.97 -0.75 9.8 85 5 1 2 0 1 0 0  G 661 A U 662 A G 664 A A 665 A G 666 A G 667 A G
668 A G 669 A G 670 A A 716 A C 732 A G 733 A G
734 A C 736 A C 737 A U 740 A A 767 A A 768 A G
769 A C 770 A A 781 A A 802 A G 803 A U 804 A C
805 A C 806 A A 1513 A G 1523 A C 1524 A G 1525 A
MG 1648 A MG 1688 A MG 1753 A
20 1.25 1.25 90.7 -0.92 -0.75 9.4 85 6 1 1 0 1 0 0  G 661 A U 662 A G 664 A A 665 A G 666 A G 667 A G
668 A G 669 A G 670 A A 716 A C 732 A G 733 A G
734 A C 736 A C 737 A U 740 A A 767 A A 768 A G
769 A C 770 A A 781 A A 782 A A 802 A G 803 A U
804 A C 805 A C 806 A A 1513 A G 1514 A G 1523 A
C 1524 A G 1525 A MG 1648 A MG 1688 A MG 1753 A
21 1.22 1.22 90.3 -0.94 -0.75 9.7 85 6 1 1 0 1 0 0  G 661 A U 662 A G 664 A A 665 A G 666 A G 667 A G
668 A G 669 A G 670 A A 716 A C 732 A G 733 A G
734 A C 736 A C 737 A U 740 A A 767 A A 768 A G
769 A C 770 A A 781 A A 782 A A 802 A G 803 A U
804 A C 805 A C 806 A A 1513 A G 1514 A G 1523 A
C 1524 A G 1525 A MG 1648 A MG 1688 A MG 1753 A
22 1.23 1.22 96.3 -1.10 -0.76 11.9 77 4 1 1 0 0 1 0  A 665 A A 716 A U 717 A G 722 A U 723 A G 724 A G
725 A C 726 A G 727 A A 728 A A 729 A C 732 A G
733 A A 767 A A 768 A G 769 A C 770 A A 781 A A
802 A G 803 A U 804 A C 805 A G 818 A U 822 A C
823 A G 824 A A 825 A C 826 A U 827 A G 851 A G
852 A C 853 A U 854 A U 855 A U 870 A U 871 A A
1513 A G 1523 A C 1524 A G 1525 A
23 2.03 2.03 24.2 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  A 139 A U 140 A G 141 A A 181 A A 182 A C 183 A A
195 A A 223 A U 224 A C 225 A
24 1.24 1.24 15.8 -0.55 -0.20 8.0 76 0 1 0 3 2 1 1  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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