PDBsum entry 7nyh

Pore analysis for: 7nyh calculated with

MOLE 2.0

PDB id

7nyh

Pores calculated on whole structure

Pores calculated excluding ligands

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12 pores, coloured by radius

12 pores, coloured by radius

12 pores, coloured as in
list below

Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.

Pores

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

1.74

2.33

29.6

2.59

0.74

2.0

82

1

0

0

11

3

0

0

2

2.44

3.01

38.8

-1.11

-0.15

15.0

89

4

1

4

5

1

1

0

3

1.51

1.54

42.7

-0.09

-0.08

9.9

80

1

4

3

7

4

0

0

4

2.32

2.30

50.6

0.14

0.16

12.8

78

4

3

2

2

4

0

0

5

1.33

1.47

85.6

1.08

0.65

5.2

80

2

0

1

20

3

2

0

6

2.50

2.52

111.3

0.86

0.39

7.5

74

3

3

2

15

10

2

0

7

1.96

2.04

115.1

0.46

0.29

13.5

74

4

4

1

16

10

2

1

8

1.22

3.54

143.5

0.73

0.39

12.1

75

6

4

2

25

13

1

1

9

1.26

3.41

176.0

0.76

0.29

7.3

77

6

3

6

28

14

1

0

10

1.18

1.47

276.5

0.80

0.34

9.2

77

7

5

4

36

16

3

1

11

1.18

1.51

277.3

-0.75

0.02

17.6

82

14

5

9

19

6

3

0

12

1.41

1.74

288.3

-1.60

-0.24

21.0

81

16

5

10

8

7

4

0

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Pores were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.