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PDBsum entry 7nxk

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Transcription PDB id
7nxk
Contents
Protein chains
322 a.a.
246 a.a.
Ligands
UUB ×2
Waters ×58

References listed in PDB file
Key reference
Title Structure-Activity relationship study of thz531 derivatives enables the discovery of bsj-01-175 as a dual cdk12/13 covalent inhibitor with efficacy in ewing sarcoma.
Authors B.Jiang, J.Jiang, I.H.Kaltheuner, A.B.Iniguez, K.Anand, F.M.Ferguson, S.B.Ficarro, B.K.A.Seong, A.K.Greifenberg, S.Dust, N.P.Kwiatkowski, J.A.Marto, K.Stegmaier, T.Zhang, M.Geyer, N.S.Gray.
Ref. Eur J Med Chem, 2021, 221, 113481. [DOI no: 10.1016/j.ejmech.2021.113481]
PubMed id 33945934
Abstract
Development of inhibitors targeting CDK12/13 is of increasing interest as a potential therapy for cancers as these compounds inhibit transcription of DNA damage response (DDR) genes. We previously described THZ531, a covalent inhibitor with selectivity for CDK12/13. In order to elucidate structure-activity relationship (SAR), we have undertaken a medicinal chemistry campaign and established a focused library of THZ531 analogs. Among these analogs, BSJ-01-175 demonstrates exquisite selectivity, potent inhibition of RNA polymerase II phosphorylation, and downregulation of CDK12-targeted genes in cancer cells. A 3.0 Å co-crystal structure with CDK12/CycK provides a structural rational for selective targeting of Cys1039 located in a C-terminal extension from the kinase domain. With moderate pharmacokinetic properties, BSJ-01-175 exhibits efficacy against an Ewing sarcoma tumor growth in a patient-derived xenograft (PDX) mouse model following 10 mg/kg once a day, intraperitoneal administration. Taken together, BSJ-01-175 represents the first selective CDK12/13 covalent inhibitor with in vivo efficacy reported to date.
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