 |
PDBsum entry 7nib
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Tunnel analysis for: 7nib calculated with  MOLE 2.0
|
PDB id
|
|
|
|
7nib
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Tunnels calculated on whole structure |
|
Tunnels calculated excluding ligands
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
|
|
|
29 tunnels,
coloured by tunnel radius |
|
29 tunnels,
coloured by
tunnel radius
|
29 tunnels,
coloured as in
list below
|
|
|
|
|
|
Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. |
|
|
|
|
|
|
|
Free R
|
|
|
|
|
|
|
Length
|
|
|
|
|
|
|
HPathy
|
|
|
|
|
|
|
HPhob
|
|
|
|
|
|
|
Polar
|
|
|
|
|
|
|
Rel Mut
|
|
|
|
|
|
|
Residue..type
|
|
|
|
|
|
|
Ligands
|
|
|
|
|
|
|
 |
Radius |
 |
1 |
 |
1.22 |
1.22 |
27.4 |
-1.35 |
-0.40 |
15.5 |
83 |
|
2 |
3 |
2 |
2 |
1 |
1 |
0 |
|
|
 |
|
2 |
 |
1.20 |
1.20 |
30.6 |
-1.81 |
-0.54 |
17.0 |
87 |
2 |
3 |
3 |
2 |
1 |
0 |
0 |
|
|
3 |
 |
1.23 |
1.23 |
33.9 |
-1.32 |
-0.45 |
13.8 |
86 |
2 |
4 |
3 |
2 |
1 |
1 |
0 |
|
|
4 |
 |
2.47 |
3.55 |
15.3 |
-1.65 |
0.05 |
15.9 |
70 |
4 |
0 |
0 |
1 |
1 |
3 |
0 |
|
|
5 |
 |
2.47 |
4.32 |
15.9 |
-1.89 |
-0.01 |
24.3 |
75 |
3 |
0 |
1 |
2 |
1 |
2 |
0 |
|
|
6 |
 |
1.58 |
1.81 |
19.6 |
-1.51 |
-0.26 |
17.2 |
74 |
3 |
2 |
1 |
1 |
2 |
1 |
0 |
|
|
7 |
 |
0.88 |
1.50 |
24.3 |
-1.61 |
-0.29 |
18.1 |
75 |
3 |
2 |
1 |
1 |
2 |
2 |
0 |
|
|
8 |
 |
2.54 |
3.56 |
26.7 |
-1.94 |
-0.28 |
14.2 |
79 |
3 |
0 |
3 |
1 |
1 |
4 |
0 |
|
|
9 |
 |
2.54 |
3.55 |
27.8 |
-2.18 |
-0.15 |
19.1 |
81 |
3 |
0 |
2 |
1 |
1 |
3 |
0 |
|
|
10 |
 |
2.48 |
2.63 |
28.0 |
-2.60 |
-0.58 |
24.3 |
79 |
4 |
2 |
2 |
2 |
0 |
2 |
0 |
|
|
11 |
 |
1.25 |
2.07 |
18.3 |
-0.87 |
-0.15 |
24.1 |
77 |
2 |
2 |
1 |
4 |
2 |
0 |
0 |
|
|
12 |
|
1.31 |
1.92 |
18.6 |
-0.30 |
0.03 |
22.0 |
79 |
2 |
2 |
1 |
5 |
2 |
0 |
0 |
|
|
13 |
|
1.79 |
1.79 |
20.2 |
-2.29 |
-0.18 |
22.6 |
78 |
3 |
0 |
1 |
1 |
1 |
3 |
0 |
|
|
14 |
|
1.58 |
1.81 |
20.6 |
-1.98 |
-0.45 |
20.5 |
78 |
3 |
2 |
1 |
1 |
1 |
2 |
0 |
|
|
15 |
|
1.79 |
1.79 |
20.8 |
-1.76 |
-0.02 |
20.4 |
74 |
3 |
0 |
0 |
1 |
1 |
3 |
0 |
|
|
16 |
|
1.57 |
1.81 |
21.0 |
-1.93 |
-0.35 |
19.9 |
76 |
2 |
2 |
1 |
1 |
2 |
2 |
0 |
|
|
17 |
|
1.77 |
1.77 |
24.3 |
-1.83 |
-0.13 |
15.6 |
76 |
3 |
0 |
1 |
1 |
1 |
5 |
0 |
|
|
18 |
|
1.67 |
1.67 |
27.8 |
-2.38 |
-0.50 |
22.2 |
78 |
2 |
1 |
2 |
1 |
1 |
3 |
0 |
|
|
19 |
|
1.67 |
1.67 |
31.5 |
-2.56 |
-0.52 |
26.1 |
81 |
4 |
3 |
2 |
3 |
0 |
3 |
0 |
|
|
20 |
|
1.31 |
1.31 |
15.1 |
-1.39 |
-0.65 |
17.6 |
77 |
1 |
1 |
0 |
1 |
1 |
0 |
0 |
|
|
21 |
|
1.18 |
1.41 |
15.6 |
-0.76 |
-0.27 |
19.6 |
81 |
2 |
1 |
0 |
4 |
1 |
0 |
0 |
|
|
22 |
|
1.18 |
1.50 |
17.0 |
-1.30 |
-0.52 |
16.5 |
82 |
3 |
1 |
0 |
1 |
1 |
0 |
0 |
|
|
23 |
|
1.18 |
1.49 |
17.5 |
-1.32 |
-0.53 |
17.0 |
82 |
3 |
1 |
0 |
1 |
1 |
0 |
0 |
|
|
24 |
|
1.15 |
1.15 |
18.6 |
-1.35 |
-0.76 |
18.0 |
83 |
2 |
1 |
0 |
1 |
0 |
0 |
0 |
|
|
25 |
|
1.14 |
1.14 |
19.0 |
-1.36 |
-0.76 |
18.2 |
83 |
2 |
1 |
0 |
1 |
0 |
0 |
0 |
|
|
26 |
|
1.32 |
1.32 |
27.5 |
-1.08 |
-0.52 |
15.7 |
87 |
2 |
3 |
0 |
2 |
1 |
0 |
0 |
|
|
27 |
|
1.19 |
2.19 |
15.5 |
-2.35 |
-0.47 |
27.8 |
85 |
2 |
3 |
1 |
2 |
0 |
2 |
0 |
|
|
28 |
|
1.18 |
1.61 |
21.4 |
-2.35 |
-0.51 |
28.8 |
85 |
3 |
3 |
1 |
3 |
0 |
1 |
0 |
|
 |
29 |
|
1.14 |
1.26 |
20.3 |
2.56 |
1.01 |
1.7 |
72 |
0 |
1 |
0 |
7 |
1 |
0 |
0 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
 |
Residue-type_colouring |
 |
|
|
|
Positive
|
Negative
|
Neutral
|
Aliphatic
|
Aromatic
|
Pro & Gly
|
Cysteine
|
|
H,K,R
|
D,E
|
S,T,N,Q
|
A,V,L,I,M
|
F,Y,W
|
P,G
|
C
|
|
|
|
MOLE 2.0 program