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PDBsum entry 7nhq

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Top Page protein ligands metals Protein-protein interface(s) pores links
Pore analysis for: 7nhq calculated with MOLE 2.0 PDB id
7nhq
Pores calculated on whole structure Pores calculated excluding ligands

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12 pores, coloured by radius 30 pores, coloured by radius 30 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 4.69 5.81 27.0 1.27 0.48 11.5 75 3 0 1 10 0 0 0  CLA 604 B CLA 605 B CLA 610 B CLA 611 B CLA 612 B
CLA 613 B CLA 615 B CLA 616 B BCR 619 B
2 2.09 2.52 30.4 0.53 0.36 11.1 69 2 2 1 4 3 1 0  LMG 101 F
3 3.45 6.88 31.2 0.12 0.83 11.4 65 4 0 1 3 5 1 0  LHG 408 A CLA 504 C CLA 506 C CLA 510 C CLA 517 C
4 3.38 4.52 32.1 3.45 1.17 1.7 61 1 0 0 10 2 0 0  CLA 604 B CLA 605 B CLA 610 B CLA 612 B CLA 615 B
CLA 616 B BCR 619 B
5 3.35 3.35 36.4 1.31 0.76 11.5 80 3 0 1 10 4 0 0  LMG 101 3 CLA 603 B CLA 604 B CLA 605 B CLA 606 B
CLA 610 B CLA 611 B CLA 612 B CLA 613 B CLA 615 B
LMG 403 D
6 3.45 6.89 37.5 0.01 0.79 14.4 66 5 0 1 5 5 0 0  LHG 408 A CLA 505 C CLA 509 C CLA 510 C CLA 511 C
CLA 513 C CLA 517 C
7 1.17 1.92 43.9 2.45 1.04 0.7 83 0 0 1 13 3 1 0  CLA 512 C BCR 515 C BCR 101 K
8 1.11 1.45 45.0 -0.36 -0.23 17.1 78 2 6 2 4 3 1 0  
9 1.20 1.84 46.7 0.89 0.93 5.2 62 2 0 1 5 9 1 0  LHG 408 A CLA 504 C CLA 506 C CLA 510 C CLA 517 C
CLA 402 D
10 1.18 1.38 50.6 0.30 0.36 11.0 74 4 0 1 9 3 3 0  CLA 603 B CLA 604 B CLA 605 B CLA 606 B CLA 610 B
CLA 612 B BCR 619 B
11 1.22 1.40 51.4 1.48 0.69 3.9 78 1 0 2 16 3 3 0  CLA 504 C CLA 506 C CLA 510 C CLA 512 C BCR 515 C
CLA 517 C
12 1.20 1.74 53.1 0.69 0.89 8.8 63 3 0 1 7 9 0 0  LHG 408 A CLA 505 C CLA 509 C CLA 510 C CLA 511 C
CLA 513 C CLA 517 C CLA 402 D
13 1.22 1.40 54.8 0.97 0.62 7.5 79 2 0 2 18 2 2 0  CLA 505 C CLA 509 C CLA 510 C CLA 511 C CLA 512 C
CLA 513 C BCR 515 C CLA 517 C
14 3.80 3.90 55.2 -0.64 0.10 21.4 80 8 3 3 11 3 0 0  CLA 602 B CLA 603 B CLA 605 B CLA 608 B CLA 609 B
CLA 610 B BCR 101 H
15 1.18 1.38 58.0 1.12 0.37 8.3 75 3 0 1 18 2 2 0  CLA 603 B CLA 604 B CLA 605 B CLA 606 B CLA 610 B
CLA 612 B CLA 613 B CLA 615 B CLA 616 B BCR 619 B
16 1.19 1.93 59.3 1.88 0.74 3.9 80 1 0 1 17 4 2 0  CLA 504 C CLA 506 C CLA 510 C CLA 512 C BCR 515 C
CLA 517 C BCR 101 K
17 1.17 1.95 62.7 1.50 0.68 6.4 80 2 0 1 19 3 1 0  CLA 505 C CLA 509 C CLA 510 C CLA 511 C CLA 512 C
CLA 513 C BCR 515 C CLA 517 C BCR 101 K
18 1.47 1.46 64.2 0.65 0.52 8.1 74 4 1 6 8 8 1 0  LHG 408 A CLA 504 C CLA 506 C CLA 510 C CLA 517 C
19 1.22 1.40 65.5 1.15 0.73 3.4 73 2 0 2 15 9 2 0  LHG 408 A CLA 510 C CLA 512 C BCR 515 C CLA 517 C
20 2.97 5.92 68.3 2.25 0.90 4.2 73 2 0 1 21 13 2 0  LMG 101 3 PHO 404 A CLA 405 A CLA 401 D CLA 402 D
LMG 404 D PL9 405 D PHO 406 D CLA 407 D
21 3.80 3.96 69.6 -0.48 0.10 20.0 81 10 3 4 11 3 0 0  CLA 603 B CLA 604 B CLA 605 B CLA 608 B CLA 609 B
CLA 610 B CLA 611 B CLA 612 B CLA 613 B CLA 615 B
BCR 101 H
22 2.30 2.40 69.7 1.38 0.64 7.3 77 4 1 1 13 3 1 1  CLA 503 C CLA 504 C CLA 505 C CLA 508 C CLA 509 C
CLA 511 C CLA 513 C BCR 516 C CLA 517 C
23 2.85 2.89 86.8 1.81 0.73 3.8 73 3 0 1 21 10 1 0  CLA 602 B CLA 603 B CLA 605 B CLA 608 B CLA 609 B
CLA 610 B CLA 402 D CLA 407 D CLA 408 D BCR 102 F
BCR 101 H
24 1.85 2.01 102.5 -1.38 -0.33 16.3 79 9 2 7 3 8 2 0  LMG 101 3 LHG 408 A LMG 404 D
25 2.34 6.23 105.5 0.89 0.76 9.7 71 8 1 2 16 10 1 1  LHG 408 A CLA 503 C CLA 504 C CLA 505 C CLA 508 C
CLA 509 C CLA 510 C CLA 511 C BCR 516 C CLA 517 C
26 2.85 2.92 116.4 1.86 0.69 4.5 72 5 0 1 28 10 1 1  CLA 602 B CLA 603 B CLA 604 B CLA 605 B CLA 608 B
CLA 609 B CLA 610 B CLA 612 B CLA 613 B CLA 615 B
CLA 616 B BCR 619 B CLA 407 D CLA 408 D BCR 102 F
BCR 101 H
27 2.89 3.56 120.1 -0.03 0.04 12.7 81 4 4 3 11 4 3 0  CLA 407 D
28 1.17 1.41 125.8 1.35 0.72 6.9 76 5 1 3 29 8 3 1  CLA 503 C CLA 504 C CLA 505 C CLA 508 C CLA 509 C
CLA 510 C CLA 511 C CLA 512 C BCR 515 C BCR 516 C
CLA 517 C
29 1.80 2.73 127.4 -0.50 -0.07 16.6 75 6 14 3 13 10 2 0  CLA 607 B CLA 611 B CLA 613 B BCR 617 B BCR 618 B
LMG 403 D
30 1.35 3.44 160.9 -0.82 -0.09 16.1 75 7 8 5 13 10 3 0  CLA 607 B CLA 611 B CLA 613 B BCR 617 B BCR 618 B
LMG 403 D

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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