PDBsum entry 7na7

Pore analysis for: 7na7 calculated with

MOLE 2.0

PDB id

7na7

Pores calculated on whole structure

Pores calculated excluding ligands

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without HETATM:

9 pores, coloured by radius

13 pores, coloured by radius

13 pores, coloured as in
list below

Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.

Pores

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

2.42

3.23

31.7

-1.73

-0.46

29.1

79

6

3

0

3

1

0

0

2

1.59

1.90

35.0

-1.45

-0.56

20.3

85

3

4

3

2

2

0

0

3

1.20

1.39

43.0

-0.18

0.04

8.7

65

2

1

3

4

6

3

0

1IC 3 L

4

1.58

1.89

43.7

-1.93

-0.51

23.0

83

8

3

3

3

1

0

0

5

1.30

1.35

82.1

-1.30

-0.50

16.3

88

8

5

7

6

3

1

0

6

1.32

1.38

84.2

-1.36

-0.42

15.9

87

12

3

8

6

2

1

0

7

1.28

1.28

92.8

-0.91

-0.14

23.1

85

8

3

1

9

1

0

0

CLR 402 R

8

1.28

1.28

96.2

-0.61

-0.22

21.0

86

5

6

1

9

2

0

0

CLR 402 R

9

1.34

1.32

106.8

-0.82

-0.29

18.0

87

7

6

4

9

2

0

0

CLR 402 R

10

1.21

1.25

114.5

0.77

0.39

12.1

79

3

2

3

16

6

0

1

1IC 3 L CLR 402 R

11

1.18

1.22

116.5

0.50

0.14

13.0

83

5

6

4

19

6

0

1

1IC 3 L CLR 402 R

12

1.28

1.33

117.9

-1.84

-0.41

22.4

87

11

4

8

6

2

2

0

13

1.44

1.54

128.7

0.36

0.23

11.5

75

4

3

4

17

7

3

1

1IC 3 L CLR 402 R

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Pores were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.