PDBsum entry 7na7

Tunnel analysis for: 7na7 calculated with

MOLE 2.0

PDB id

7na7

Tunnels calculated on whole structure

Tunnels calculated excluding ligands

View options

MOLEonline 2.0 manipulation
and
visualization
with HETATM:

without HETATM:

6 tunnels, coloured by tunnel radius

7 tunnels, coloured by tunnel radius

7 tunnels, coloured as in
list below

Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.

Tunnels

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

1.19

1.39

28.0

-0.39

-0.02

7.9

72

1

0

3

2

5

0

0

1IC 3 L

2

1.35

1.70

29.5

-0.35

-0.03

10.0

78

1

1

4

5

3

2

0

1IC 3 L

3

1.32

1.48

32.2

-1.22

-0.35

14.7

78

3

2

5

0

4

1

0

1IC 3 L

4

1.35

1.37

36.3

-0.36

-0.10

7.4

71

1

1

4

1

4

2

0

1IC 3 L

5

1.50

2.73

15.9

-2.09

-0.30

34.3

83

4

2

1

2

0

0

0

6

1.27

1.34

17.7

-0.86

-0.67

8.6

91

2

1

3

2

0

0

1

7

1.18

1.78

24.2

0.59

0.13

8.5

88

1

2

1

5

2

0

0

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Tunnels were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.