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PDBsum entry 7mw3

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Top Page protein ligands Protein-protein interface(s) pores links
Pore analysis for: 7mw3 calculated with MOLE 2.0 PDB id
7mw3
Pores calculated on whole structure Pores calculated excluding ligands

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33 pores, coloured by radius 31 pores, coloured by radius 31 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 3.09 3.19 28.8 -2.07 -0.66 13.3 88 2 1 3 1 1 0 0  NAG 1304 C
2 1.40 1.58 31.8 -0.60 0.22 7.0 81 1 0 4 1 5 0 0  
3 2.84 4.41 35.9 -0.90 -0.13 23.8 78 2 5 0 7 2 2 0  
4 2.45 2.54 44.4 -1.16 -0.28 20.8 86 5 4 3 5 1 0 0  
5 3.31 4.23 50.4 -1.49 -0.49 19.2 79 4 5 3 2 1 2 0  NAG 1304 C NAG 1 P
6 3.02 3.20 52.6 -1.50 -0.52 18.6 75 6 4 2 2 3 2 0  NAG 1 P
7 1.60 1.79 58.4 -1.89 -0.51 21.3 77 7 5 3 2 4 1 0  
8 1.59 1.79 64.5 -1.69 -0.44 20.2 78 8 5 3 4 5 1 0  
9 2.71 3.18 72.6 -1.65 -0.67 15.0 91 3 3 9 3 0 2 0  NAG 1 d NAG 2 d
10 2.43 2.53 72.7 -1.21 -0.31 19.7 83 7 6 5 6 1 1 0  NAG 1 c
11 2.20 3.02 77.8 -0.75 -0.36 13.3 84 3 7 8 15 1 0 0  
12 1.97 1.97 83.8 -1.23 -0.25 19.4 82 6 5 3 6 3 1 0  
13 2.10 2.92 93.3 -0.82 -0.32 16.1 82 9 7 8 11 1 1 0  
14 2.26 2.35 97.7 -1.07 -0.53 9.9 89 5 5 17 11 1 1 0  
15 2.10 2.83 98.3 -1.22 -0.48 12.5 87 7 5 15 7 3 1 0  
16 2.26 2.35 100.5 -0.99 -0.53 11.8 89 9 7 14 9 1 1 0  
17 2.00 1.99 106.1 -1.17 -0.27 18.1 87 8 3 7 8 2 1 0  
18 2.08 2.04 110.5 -1.55 -0.42 20.0 79 8 5 4 5 4 3 0  NAG 1 c
19 2.24 3.01 116.3 -0.75 -0.32 15.4 85 9 10 8 15 2 0 0  
20 2.21 2.35 128.8 -1.06 -0.50 13.1 87 11 9 16 10 1 2 0  NAG 1 c
21 2.20 2.99 144.6 -0.85 -0.34 15.5 84 11 12 10 16 2 1 0  NAG 1 c
22 1.43 1.57 150.7 -1.42 -0.46 18.0 83 13 10 14 15 6 3 0  
23 1.45 1.57 152.1 -1.31 -0.45 17.9 84 16 8 12 11 5 3 0  
24 1.89 1.92 175.5 -0.92 -0.32 15.6 86 12 10 12 17 3 1 0  
25 1.26 1.42 186.7 -1.46 -0.46 20.2 83 21 13 13 13 6 3 0  
26 3.16 4.72 25.9 -1.59 -0.80 19.1 97 1 2 6 1 0 0 0  
27 2.44 3.78 46.5 -2.75 -0.80 22.2 88 3 5 6 0 0 1 0  
28 1.47 1.65 55.8 -1.47 -0.54 8.2 97 3 1 12 1 3 1 0  
29 1.48 1.66 59.6 -1.98 -0.53 14.4 89 4 4 8 0 3 0 0  
30 2.46 3.92 69.8 -2.18 -0.66 17.7 92 6 5 11 1 1 2 0  
31 1.18 2.53 38.1 -0.24 -0.46 5.7 92 2 2 8 4 0 0 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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