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PDBsum entry 7mim
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Top Page protein ligands metals Protein-protein interface(s) pores links
Pore analysis for: 7mim calculated with MOLE 2.0 PDB id
7mim
Pores calculated on whole structure Pores calculated excluding ligands
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16 pores, coloured by radius 29 pores, coloured by radius 29 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.17 1.49 42.9 -1.69 -0.54 23.7 89 4 4 4 2 2 0 0  
2 1.32 1.41 53.9 -1.65 -0.48 22.2 83 4 4 4 3 0 1 1  POV 906 A POV 908 A POV 908 C POV 909 C
3 1.17 1.49 69.4 -1.65 -0.44 24.5 90 8 5 5 2 2 0 0  
4 1.17 1.49 69.5 -1.29 -0.20 18.3 81 8 5 4 3 5 1 0  
5 1.33 1.41 77.0 0.37 0.56 10.2 70 4 2 3 5 11 0 0  POV 906 C POV 903 D POV 904 D POV 905 D POV 906 D
6 1.34 1.41 77.1 0.33 0.55 10.7 70 4 2 3 5 11 0 0  POV 906 A POV 907 A POV 908 A POV 909 A POV 908 D
7 2.21 3.55 98.7 -0.34 0.39 14.2 75 9 0 4 6 11 0 0  POV 906 B POV 901 C POV 902 C POV 903 C POV 904 C
8 2.21 3.55 98.7 -0.34 0.39 14.2 75 9 0 4 6 11 0 0  POV 902 A POV 901 B POV 902 B POV 903 B POV 904 B
9 1.17 1.49 103.7 -1.78 -0.45 26.5 86 11 9 5 5 2 1 0  
10 3.08 3.09 106.7 -2.47 -0.78 26.9 88 4 10 10 3 0 1 1  POV 906 A POV 908 A POV 909 B POV 908 C POV 909 C
POV 903 D
11 1.34 1.42 116.2 -2.45 -0.78 26.7 88 5 12 11 3 0 1 1  POV 906 A POV 908 A POV 901 B POV 908 C POV 909 C
POV 902 D
12 1.34 1.41 116.9 -2.75 -0.84 30.9 86 7 12 10 0 0 0 2  POV 905 A POV 901 B POV 901 C POV 902 D
13 1.33 1.41 116.9 -2.75 -0.84 30.9 86 7 12 10 0 0 0 2  POV 905 A POV 909 B POV 901 C POV 903 D
14 1.36 1.41 117.2 -2.78 -0.84 31.7 86 7 12 11 0 0 0 2  POV 901 B POV 909 B POV 902 D POV 903 D
15 1.36 1.41 117.9 -2.54 -0.79 28.0 88 5 12 12 3 0 1 1  POV 905 A POV 906 A POV 908 A POV 901 C POV 908 C
POV 909 C
16 1.36 1.42 117.9 -2.79 -0.84 31.6 86 7 12 11 0 0 0 2  POV 905 A POV 906 A POV 901 C POV 909 C
17 1.31 1.46 178.3 -0.97 -0.24 20.2 79 6 12 11 8 9 1 1  POV 906 A POV 908 B POV 909 B POV 906 C POV 909 C
POV 903 D POV 904 D POV 905 D POV 906 D
18 2.51 3.90 197.6 -1.11 -0.19 20.4 81 11 10 12 9 9 1 1  POV 902 A POV 906 A POV 901 B POV 902 B POV 903 B
POV 904 B POV 909 C POV 901 D POV 902 D
19 2.42 3.84 198.6 -1.20 -0.22 21.3 82 11 10 13 9 9 1 1  POV 902 A POV 901 B POV 902 B POV 903 B POV 904 B
POV 901 D POV 902 D POV 903 D
20 2.46 3.33 198.3 -1.18 -0.22 20.9 81 11 10 12 9 9 1 1  POV 902 A POV 901 B POV 902 B POV 903 B POV 904 B
POV 901 C POV 901 D POV 902 D
21 2.49 3.91 199.3 -1.05 -0.17 20.3 82 11 10 13 9 9 1 1  POV 904 A POV 905 A POV 906 A POV 906 B POV 901 C
POV 902 C POV 903 C POV 904 C
22 2.46 3.33 198.3 -1.19 -0.22 20.9 81 11 10 12 9 9 1 1  POV 904 A POV 905 A POV 906 B POV 901 C POV 902 C
POV 903 C POV 904 C POV 903 D
23 2.43 4.00 238.0 -1.30 -0.25 22.7 81 14 16 12 13 9 2 1  POV 904 A POV 905 A POV 901 B POV 906 B POV 901 C
POV 902 C POV 903 C POV 904 C POV 902 D
24 1.25 1.36 247.7 -0.97 -0.24 15.2 81 11 12 12 14 11 1 0  POV 906 A POV 907 A POV 909 A POV 908 C POV 909 C
POV 908 D POV 909 D
25 2.23 2.37 271.3 -0.87 -0.23 16.6 81 13 12 12 17 7 1 1  POV 908 B POV 909 B POV 906 C POV 907 C POV 903 D
POV 904 D POV 905 D POV 906 D
26 2.23 2.37 271.3 -0.82 -0.22 16.3 81 13 12 12 17 7 1 1  POV 904 A POV 905 A POV 906 B POV 907 B POV 901 C
POV 902 C POV 903 C POV 904 C
27 1.30 1.36 280.1 -0.89 -0.25 17.1 81 14 14 13 17 7 1 1  POV 902 A POV 903 A POV 901 B POV 902 B POV 903 B
POV 904 B POV 901 D POV 902 D
28 1.23 1.23 34.2 1.33 0.32 4.6 86 2 1 2 7 0 1 0  
29 1.23 1.23 34.2 1.33 0.32 4.6 86 2 1 2 7 0 1 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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