PDBsum entry 7mfc

Tunnel analysis for: 7mfc calculated with

MOLE 2.0

PDB id

7mfc

Tunnels calculated on whole structure

Tunnels calculated excluding ligands

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MOLEonline 2.0 manipulation
and
visualization
with HETATM:

without HETATM:

2 tunnels, coloured by tunnel radius

6 tunnels, coloured by tunnel radius

6 tunnels, coloured as in
list below

Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.

Tunnels

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

1.33

1.50

15.4

-0.68

0.18

7.5

74

1

1

1

3

2

1

0

2

1.35

1.54

17.3

-0.80

0.03

10.2

86

1

1

2

4

1

1

0

3

1.32

1.47

18.4

-0.28

0.13

10.3

79

1

1

1

5

2

1

0

4

1.35

1.53

20.3

-0.36

0.04

12.0

88

1

1

2

6

1

1

0

5

1.34

1.48

54.0

0.16

0.11

12.0

77

2

2

2

13

4

1

1

Z6V 1000 A

6

1.59

1.59

19.7

0.01

-0.12

2.2

79

0

0

1

2

1

1

0

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Tunnels were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.