 |
PDBsum entry 7lyc
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Pore analysis for: 7lyc calculated with  MOLE 2.0
|
PDB id
|
|
|
|
7lyc
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Pores calculated on whole structure |
|
Pores calculated excluding ligands
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
|
|
|
30 pores,
coloured by radius |
|
30 pores,
coloured by radius
|
30 pores,
coloured as in
list below
|
|
|
|
|
|
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. |
|
|
|
|
|
|
|
Free R
|
|
|
|
|
|
|
Length
|
|
|
|
|
|
|
HPathy
|
|
|
|
|
|
|
HPhob
|
|
|
|
|
|
|
Polar
|
|
|
|
|
|
|
Rel Mut
|
|
|
|
|
|
|
Residue..type
|
|
|
|
|
|
|
Ligands
|
|
|
|
|
|
|
 |
Radius |
 |
1 |
 |
3.56 |
3.62 |
32.1 |
-0.57 |
-0.42 |
8.4 |
87 |
|
3 |
0 |
3 |
2 |
0 |
0 |
0 |
|
DA -25 I DA -22 I DC -21 I DC -20 I DG -
19 I DC 51 I DA -
55 J DA 16 J DC 19 J DG 20 J DG 21 J
|
 |
|
2 |
 |
1.22 |
1.79 |
36.5 |
0.18 |
0.10 |
10.1 |
67 |
2 |
1 |
1 |
7 |
1 |
0 |
1 |
|
|
3 |
 |
2.12 |
2.12 |
48.6 |
-0.63 |
-0.48 |
9.4 |
89 |
3 |
0 |
4 |
2 |
0 |
0 |
0 |
DG -55 I DA 16 I DA 17 I DC 19 I DG 20 I DC -
25 J DT -24 J DT -23 J DG -22 J DG -21 J DC -
20 J DG 51 J DC 52 J
|
|
4 |
 |
2.10 |
2.10 |
48.9 |
-0.49 |
-0.59 |
6.5 |
83 |
2 |
0 |
2 |
2 |
0 |
0 |
0 |
DG -55 I DA 16 I DA 17 I DC 19 I DG 20 I DT -
24 J DT -23 J DG -22 J DG -21 J DC -20 J DT -
16 J DC 60 J DC 61 J
|
|
5 |
 |
1.28 |
1.54 |
55.1 |
-1.22 |
-0.32 |
19.2 |
71 |
4 |
5 |
1 |
2 |
2 |
1 |
2 |
DG -11 I
|
|
6 |
 |
2.10 |
2.10 |
55.8 |
-0.87 |
-0.58 |
10.9 |
82 |
5 |
1 |
3 |
2 |
0 |
0 |
0 |
DT -65 I DG -
55 I DA 16 I DA 17 I DC 19 I DG 20 I DT -24 J DT -
23 J DG -22 J DG -21 J DC -20 J DA -15 J DA -
14 J DC 60 J DC 61 J
|
|
7 |
 |
2.12 |
2.13 |
64.9 |
-0.99 |
-0.61 |
10.7 |
81 |
4 |
1 |
3 |
3 |
0 |
0 |
0 |
DG -55 I DC 19 I DG 20 I DG 26 I DT -24 J DT -
23 J DG -22 J DT -16 J DC 60 J DC 61 J
|
|
8 |
 |
2.11 |
2.10 |
71.9 |
-1.13 |
-0.60 |
13.1 |
80 |
6 |
2 |
4 |
3 |
0 |
0 |
0 |
DT -65 I DG -55 I DC 19 I DG 20 I DG 26 I DT -
24 J DT -23 J DG -22 J DA -15 J DA -
14 J DC 60 J DC 61 J
|
|
9 |
 |
2.70 |
2.70 |
72.2 |
-1.88 |
-0.48 |
22.8 |
85 |
7 |
1 |
4 |
3 |
2 |
0 |
0 |
DG -55 I DA -45 I DA -44 I DT -43 I DT -42 I DG -
41 I DG -40 I DA 29 I DG -35 J DC -
25 J DC 37 J DG 38 J DA 39 J DC 40 J DC 41 J DG
51 J
|
|
10 |
 |
2.11 |
2.40 |
74.7 |
-2.00 |
-0.59 |
22.4 |
88 |
7 |
1 |
4 |
2 |
0 |
0 |
0 |
DG -55 I DG 26 I DG 27 I DA 29 I DT 30 I DT -
32 J DA -31 J DA -30 J DC -25 J DG 51 J DC 52 J
|
|
11 |
 |
2.69 |
2.69 |
77.2 |
-2.25 |
-0.52 |
28.6 |
82 |
10 |
2 |
1 |
3 |
2 |
0 |
0 |
DT -42 I DG -41 I DG -
40 I DC 37 I DT 38 I DG 40 I DT 41 I DC 42 I DG -
44 J DA -43 J DG -42 J DA -41 J DC -40 J DG -
35 J DC 37 J DG 38 J DA 39 J DC 40 J DC 41 J
|
|
12 |
|
2.85 |
3.11 |
77.5 |
-2.42 |
-0.51 |
27.4 |
85 |
9 |
1 |
4 |
2 |
1 |
0 |
0 |
DA -35 I DA -
25 I DC 37 I DT 38 I DT 41 I DC 42 I DC 51 I DG
52 I DA -55 J DG -45 J DG -44 J DA -43 J DG -
42 J DA -41 J DC -40 J
|
|
13 |
|
1.49 |
1.49 |
85.7 |
-1.84 |
-0.60 |
19.2 |
78 |
7 |
2 |
2 |
0 |
1 |
1 |
0 |
DA -14 I DA -13 I DC -12 I DG -11 I DC -10 I DA -
9 I DA 59 I DT 60 I DA 65 I DC 66 I DA 67 I DT 68
I DA -64 J DT -63 J DA -62 J DA 6 J DC 7 J DT 9 J
|
|
14 |
|
3.75 |
3.72 |
87.0 |
-1.81 |
-0.58 |
21.5 |
83 |
9 |
7 |
4 |
3 |
1 |
1 |
0 |
DT -65 I DC -64 I DC -
63 I DA 6 J DA 59 J DC 60 J DC 61 J
|
|
15 |
|
3.65 |
3.67 |
87.2 |
-1.79 |
-0.63 |
18.6 |
88 |
8 |
5 |
6 |
4 |
0 |
1 |
0 |
DT -65 I DC -64 I DC -63 I DG -
11 I DA 59 J DC 60 J DC 61 J
|
|
16 |
|
2.39 |
3.65 |
91.8 |
-2.50 |
-0.53 |
27.4 |
82 |
13 |
8 |
6 |
1 |
3 |
0 |
0 |
DA -25 I DC 51 I DG 52 I DA -55 J
|
|
17 |
|
2.18 |
2.43 |
93.1 |
-2.29 |
-0.51 |
29.1 |
82 |
10 |
1 |
1 |
2 |
1 |
0 |
0 |
DA -45 I DA -44 I DT -43 I DT -42 I DG -41 I DG -
40 I DG 26 I DG 27 I DT 30 I DT 31 I DG -35 J DA -
34 J DG -33 J DT -32 J DA -31 J DA -
30 J DC 37 J DG 38 J DA 39 J DC 40 J DC 41 J
|
|
18 |
|
2.11 |
4.24 |
94.9 |
-2.20 |
-0.53 |
24.9 |
80 |
11 |
7 |
6 |
2 |
3 |
1 |
0 |
DG -55 I DA 29 I DC -25 J DG 51 J DC 52 J
|
|
19 |
|
2.42 |
2.47 |
100.7 |
-1.90 |
-0.46 |
27.7 |
81 |
11 |
12 |
4 |
4 |
2 |
0 |
0 |
DA 6 J
|
|
20 |
|
2.87 |
2.90 |
101.1 |
-2.13 |
-0.59 |
25.2 |
84 |
8 |
3 |
5 |
2 |
2 |
0 |
0 |
DG -55 I DA -
45 I DA 29 I DC 37 I DT 38 I DG 40 I DT 41 I DC
42 I DG -44 J DA -43 J DG -42 J DA -41 J DC -
40 J DG -35 J DC -
25 J DC 40 J DC 41 J DG 51 J DC 52 J
|
|
21 |
|
2.57 |
2.59 |
100.9 |
-1.99 |
-0.52 |
25.8 |
85 |
11 |
10 |
6 |
4 |
1 |
0 |
0 |
DG -11 I
|
|
22 |
|
2.69 |
2.69 |
106.8 |
-1.58 |
-0.65 |
18.2 |
86 |
10 |
3 |
5 |
3 |
1 |
0 |
0 |
DT -42 I DG -41 I DG -40 I DT -36 I DA -35 I DA -
25 I DG 40 I DT 41 I DC 51 I DA -55 J DG -
45 J DG -37 J DG -36 J DG -
35 J DC 37 J DG 38 J DA 39 J DC 40 J DC 41 J
|
|
23 |
|
2.02 |
2.31 |
113.9 |
-2.14 |
-0.58 |
26.2 |
85 |
12 |
6 |
4 |
3 |
2 |
0 |
0 |
DG -41 I DG -40 I DA -33 I DC -32 I DG -
11 I DC 30 J DC 37 J DG 38 J
|
|
24 |
|
2.46 |
2.67 |
121.9 |
-2.10 |
-0.63 |
21.6 |
83 |
12 |
10 |
7 |
3 |
1 |
1 |
0 |
DT -65 I DC -64 I DC -63 I DA -
14 J DA 59 J DC 60 J DC 61 J
|
|
25 |
|
2.07 |
3.13 |
124.3 |
-2.29 |
-0.47 |
27.9 |
79 |
17 |
8 |
4 |
4 |
4 |
1 |
0 |
DA -45 I DA -44 I DT -43 I DT -42 I DG -41 I DG -
40 I DG -
35 J DC 37 J DG 38 J DA 39 J DC 40 J DC 41 J
|
|
26 |
|
2.14 |
3.05 |
127.1 |
-1.98 |
-0.36 |
28.5 |
80 |
18 |
8 |
4 |
6 |
4 |
1 |
0 |
DA -45 I DA -44 I DT -43 I DT -42 I DG -41 I DG -
40 I DG -
35 J DC 37 J DG 38 J DA 39 J DC 40 J DC 41 J
|
|
27 |
|
2.82 |
3.00 |
130.4 |
-1.61 |
-0.67 |
18.0 |
86 |
8 |
4 |
8 |
2 |
1 |
0 |
0 |
DG -55 I DA -45 I DT -36 I DA -35 I DA -
25 I DA 29 I DG 40 I DT 41 I DC 51 I DA -55 J DG -
45 J DG -37 J DG -36 J DG -35 J DC -
25 J DC 40 J DC 41 J DG 51 J DC 52 J
|
|
28 |
|
2.84 |
2.89 |
135.7 |
-2.72 |
-0.52 |
33.0 |
82 |
17 |
5 |
3 |
2 |
2 |
0 |
0 |
DA -35 I DC -32 I DG -
11 I DC 37 I DT 38 I DT 41 I DC 42 I DG -45 J DG -
44 J DA -43 J DG -42 J DA -41 J DC -
40 J DG 29 J DC 30 J DT 31 J
|
|
29 |
|
2.85 |
2.88 |
145.2 |
-2.27 |
-0.43 |
31.3 |
80 |
18 |
7 |
2 |
5 |
3 |
0 |
0 |
DA -35 I DC -
32 I DC 37 I DT 38 I DT 41 I DC 42 I DG -45 J DG -
44 J DA -43 J DG -42 J DA -41 J DC -
40 J DA 6 J DG 29 J DC 30 J DT 31 J
|
 |
30 |
|
2.42 |
2.67 |
151.1 |
-1.72 |
-0.69 |
20.0 |
83 |
11 |
4 |
5 |
1 |
0 |
0 |
0 |
DA -45 I DT -36 I DA -35 I DA -
25 I DG 26 I DG 27 I DT 30 I DT 31 I DG 40 I DT
41 I DC 51 I DG 52 I DA -55 J DG -45 J DG -
37 J DG -36 J DG -35 J DA -34 J DG -33 J DT -
32 J DA -31 J DA -30 J DC 40 J DC 41 J
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
 |
Residue-type_colouring |
 |
|
|
|
Positive
|
Negative
|
Neutral
|
Aliphatic
|
Aromatic
|
Pro & Gly
|
Cysteine
|
|
H,K,R
|
D,E
|
S,T,N,Q
|
A,V,L,I,M
|
F,Y,W
|
P,G
|
C
|
|
|
|
MOLE 2.0 program