PDBsum entry 7lly

Pore analysis for: 7lly calculated with

MOLE 2.0

PDB id

7lly

Pores calculated on whole structure

Pores calculated excluding ligands

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11 pores, coloured by radius

11 pores, coloured by radius

11 pores, coloured as in
list below

Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.

Pores

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

2.99

3.28

26.4

-1.47

-0.37

19.4

76

5

3

4

1

3

0

1

2

1.44

1.44

32.4

0.30

-0.21

4.2

80

1

1

2

6

0

2

1

3

1.60

2.20

34.3

0.28

0.21

9.4

68

2

0

2

6

3

1

2

4

1.88

1.89

41.4

-0.47

-0.07

9.6

73

3

0

3

2

4

2

1

5

1.72

3.82

49.7

-1.32

-0.47

14.9

80

6

3

6

2

4

2

1

6

2.09

3.42

51.9

-1.21

-0.26

15.4

78

4

1

3

2

3

0

0

7

1.59

1.62

69.1

-1.62

-0.60

17.4

83

7

3

4

2

2

1

0

8

1.59

1.61

72.3

-1.66

-0.68

14.1

86

6

4

6

2

2

1

0

9

1.99

2.15

108.2

-1.46

-0.43

20.6

84

8

5

7

6

3

0

2

10

1.16

1.97

113.1

0.38

0.12

11.7

81

4

4

1

12

4

0

0

11

1.33

1.33

141.8

-0.82

-0.24

17.5

83

9

7

8

14

4

1

1

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Pores were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.