PDBsum entry 7knu

Pore analysis for: 7knu calculated with

MOLE 2.0

PDB id

7knu

Pores calculated on whole structure

Pores calculated excluding ligands

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16 pores, coloured by radius

16 pores, coloured by radius

16 pores, coloured as in
list below

Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.

Pores

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

1.20

1.78

30.2

1.42

0.36

6.2

83

1

1

3

7

0

1

2

2

1.20

1.77

31.1

1.45

0.31

2.9

80

1

0

3

7

1

1

2

3

3.30

3.52

33.4

-1.42

-0.47

17.3

85

3

3

4

4

1

1

0

4

1.31

1.38

37.5

-0.08

0.04

13.2

83

3

2

2

7

3

0

0

5

1.29

1.86

39.5

-0.92

-0.12

12.7

78

5

0

4

7

3

0

0

6

1.31

1.38

42.6

-0.18

-0.01

13.5

82

5

1

3

9

3

0

0

7

1.20

1.77

44.1

0.37

0.09

11.5

82

3

3

4

6

0

2

2

8

1.20

1.77

46.6

0.27

0.23

9.8

74

3

0

3

8

2

1

2

9

1.13

1.72

50.8

-0.84

0.06

15.3

81

7

3

3

8

3

0

0

10

1.21

1.77

51.4

0.97

0.38

9.9

81

4

1

2

11

2

1

2

11

1.21

1.40

25.8

-0.84

-0.17

10.1

71

2

1

0

1

3

1

0

12

1.30

1.29

30.2

-0.87

-0.05

11.0

80

2

1

2

3

3

0

0

13

1.26

1.26

33.3

-0.36

0.00

8.9

79

2

1

2

2

4

0

0

14

1.21

1.39

33.6

-1.21

-0.28

13.2

74

3

2

1

2

3

1

0

15

1.26

1.44

34.3

-0.62

0.00

11.5

72

3

1

1

1

4

1

0

16

1.43

1.94

52.5

1.07

0.41

11.1

77

3

2

1

10

2

0

1

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Pores were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.