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PDBsum entry 7khc

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Top Page protein dna_rna ligands metals Protein-protein interface(s) tunnels links
Tunnel analysis for: 7khc calculated with MOLE 2.0 PDB id
7khc
Tunnels calculated on whole structure Tunnels calculated excluding ligands

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4 tunnels, coloured by tunnel radius 4 tunnels, coloured by tunnel radius 4 tunnels, coloured as in
list below
Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.
Tunnels
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.13 1.27 16.7 -1.47 -0.54 9.8 92 1 0 2 1 0 1 0  DT 11 X DT 12 X DA 73 Y
2 2.08 2.08 16.4 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  DC 60 X DA 61 X DC 62 X DT 63 X DG 21 Y DG 22 Y
DT 23 Y
3 2.12 2.12 19.6 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  DC 60 X DA 61 X DC 62 X DG 22 Y DT 23 Y DG 24 Y
4 1.34 2.36 15.5 1.24 0.59 17.9 73 1 2 0 6 0 0 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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