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PDBsum entry 7k66

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Top Page protein ligands metals Protein-protein interface(s) links
Blood clotting/immune system PDB id
7k66
Contents
Protein chains
1265 a.a.
217 a.a.
213 a.a.
Ligands
NAG-NAG-BMA-MAN-
MAN
NAG-NAG
NAG
Metals
_ZN
_CU
_CA
Waters ×1

References listed in PDB file
Key reference
Title Structure of blood coagulation factor VIII in complex with an anti-C1 domain pathogenic antibody inhibitor.
Authors J.S.Gish, L.Jarvis, K.C.Childers, S.C.Peters, C.S.Garrels, I.W.Smith, H.T.Spencer, C.B.Doering, P.Lollar, P.C.Spiegel.
Ref. Blood, 2021, 137, 2981-2986.
PubMed id 33529335
Abstract
Antibody inhibitor development in hemophilia A represents the most significant complication resulting from factor VIII (fVIII) replacement therapy. Recent studies have demonstrated that epitopes present in the C1 domain contribute to a pathogenic inhibitor response. In this study, we report the structure of a group A anti-C1 domain inhibitor, termed 2A9, in complex with a B domain-deleted, bioengineered fVIII construct (ET3i). The 2A9 epitope forms direct contacts to the C1 domain at 3 different surface loops consisting of Lys2065-Trp2070, Arg2150-Tyr2156, and Lys2110-Trp2112. Additional contacts are observed between 2A9 and the A3 domain, including the Phe1743-Tyr1748 loop and the N-linked glycosylation at Asn1810. Most of the C1 domain loops in the 2A9 epitope also represent a putative interface between fVIII and von Willebrand factor. Lastly, the C2 domain in the ET3i:2A9 complex adopts a large, novel conformational change, translocating outward from the structure of fVIII by 20 Å. This study reports the first structure of an anti-C1 domain antibody inhibitor and the first fVIII:inhibitor complex with a therapeutically active fVIII construct. Further structural understanding of fVIII immunogenicity may result in the development of more effective and safe fVIII replacement therapies.
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