spacer
spacer

PDBsum entry 7jsf

Go to PDB code: 
Top Page protein dna_rna Protein-protein interface(s) pores links
Pore analysis for: 7jsf calculated with MOLE 2.0 PDB id
7jsf
Pores calculated on whole structure Pores calculated excluding ligands

View options
MOLEonline 2.0 manipulation
and
visualization
with HETATM:
without HETATM:
 
30 pores, coloured by radius 30 pores, coloured by radius 30 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 2.93 2.93 27.3 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  
2 2.33 2.33 29.6 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  
3 2.46 2.46 38.9 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  
4 3.11 3.11 40.1 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  
5 4.62 4.62 44.2 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  
6 3.64 3.64 49.0 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  
7 2.83 2.83 49.3 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  
8 2.96 2.96 49.5 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  
9 1.88 1.88 50.5 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  
10 1.97 1.97 50.6 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  
11 2.51 2.51 51.8 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  
12 2.13 2.13 53.0 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  
13 2.83 2.83 55.6 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  
14 3.05 3.05 64.6 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  
15 3.20 3.20 65.8 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  
16 2.46 2.46 71.2 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  
17 3.20 3.20 70.9 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  
18 2.52 2.52 73.0 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  
19 2.94 2.94 74.3 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  
20 1.37 1.37 83.1 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  
21 2.46 2.46 83.8 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  
22 2.72 2.72 83.7 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  
23 1.37 1.37 87.2 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  
24 2.46 2.46 94.2 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  
25 3.20 3.20 96.1 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  
26 2.95 2.95 98.4 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  
27 1.45 1.45 102.7 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  
28 3.50 3.50 102.9 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  
29 3.02 3.02 117.8 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  
30 2.49 2.49 144.3 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
spacer
spacer