spacer
spacer

PDBsum entry 7jpr

Go to PDB code: 
Top Page protein ligands metals Protein-protein interface(s) pores links
Pore analysis for: 7jpr calculated with MOLE 2.0 PDB id
7jpr
Pores calculated on whole structure Pores calculated excluding ligands

View options
MOLEonline 2.0 manipulation
and
visualization
with HETATM:
without HETATM:
 
26 pores, coloured by radius 26 pores, coloured by radius 26 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.21 1.88 33.9 1.16 0.34 11.2 78 3 3 1 6 1 0 1  
2 2.54 3.65 79.9 -1.69 -0.15 20.4 80 12 4 7 9 2 2 0  ATP 501 E MG 502 E
3 1.59 1.79 118.1 -1.50 -0.55 17.4 84 8 9 12 8 2 4 0  
4 1.25 1.26 132.3 -0.53 0.02 12.4 76 9 5 11 15 10 1 1  
5 1.52 3.14 133.2 -1.66 -0.40 21.8 84 11 6 9 8 3 0 1  
6 1.25 1.50 154.2 -1.57 -0.26 23.6 83 13 12 12 11 4 1 2  ATP 901 A MG 902 A
7 1.40 2.10 160.1 -1.85 -0.49 22.0 81 14 10 13 8 2 5 0  
8 1.27 3.29 167.4 -2.31 -0.42 28.1 81 16 14 7 6 3 2 0  ATP 901 A MG 902 A
9 1.31 1.55 166.2 -1.21 -0.26 18.3 87 17 9 13 15 2 1 0  ATP 501 E MG 502 E
10 1.30 3.42 169.0 -1.90 -0.32 26.0 79 14 15 10 10 5 3 0  ATP 901 A MG 902 A
11 1.45 2.85 168.3 -1.42 -0.28 20.1 78 14 9 9 8 8 1 0  
12 1.19 1.21 178.6 -0.11 0.12 10.9 74 8 6 10 20 9 3 0  
13 1.30 3.32 182.8 -1.57 -0.35 21.1 84 13 14 15 11 4 1 0  ATP 901 A MG 902 A
14 1.53 1.38 196.8 -1.87 -0.32 23.9 80 18 9 9 13 3 5 1  
15 1.09 1.11 195.7 -1.88 -0.39 21.1 82 18 12 16 12 6 1 1  ATP 901 A MG 902 A ATP 501 E
16 1.20 1.17 198.4 -1.59 -0.51 16.3 86 15 9 19 12 4 4 1  
17 1.53 2.69 201.9 -1.53 -0.53 17.5 88 12 13 21 11 3 4 0  
18 1.39 2.16 201.0 -1.91 -0.60 19.5 87 15 13 22 9 1 6 0  
19 1.23 2.24 209.4 -1.18 -0.19 20.0 79 18 11 10 19 3 6 1  
20 1.25 1.12 216.5 -1.43 -0.16 19.9 79 15 16 20 17 10 2 0  ATP 901 A MG 902 A
21 1.20 3.77 216.9 -2.09 -0.49 22.9 84 14 20 20 10 3 6 0  ATP 901 A MG 902 A
22 1.40 1.35 244.0 -1.29 -0.26 20.7 79 18 14 13 17 6 5 2  
23 1.39 3.32 245.3 -1.81 -0.36 22.4 84 18 15 18 14 5 1 1  ATP 901 A MG 902 A
24 1.25 1.91 260.2 -0.95 -0.13 16.8 78 18 10 11 19 8 3 2  
25 1.28 1.56 271.7 -1.66 -0.37 22.4 85 25 13 17 16 4 4 1  
26 1.43 1.47 280.2 -0.92 -0.35 15.3 85 14 18 27 22 3 6 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
spacer
spacer