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PDBsum entry 7gmm

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Top Page protein ligands metals Protein-protein interface(s) tunnels links
Tunnel analysis for: 7gmm calculated with MOLE 2.0 PDB id
7gmm
Tunnels calculated on whole structure Tunnels calculated excluding ligands

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2 tunnels, coloured by tunnel radius 5 tunnels, coloured by tunnel radius 5 tunnels, coloured as in
list below
Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.
Tunnels
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.26 1.70 29.1 -0.99 -0.51 16.9 88 4 1 0 5 0 0 0  DMS 403 B
2 1.33 1.70 30.7 -1.34 -0.53 21.7 85 4 4 1 5 0 0 0  DMS 403 B
3 1.26 1.70 32.1 -1.22 -0.51 20.9 85 4 4 0 5 0 0 0  DMS 403 B
4 1.34 1.70 38.7 -1.04 -0.50 17.5 82 4 3 1 5 0 0 0  DMS 402 B DMS 403 B
5 1.25 2.58 16.3 -0.17 0.13 18.3 73 2 1 0 3 2 2 0  DMS 402 A

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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