spacer
spacer

PDBsum entry 7f9h

Go to PDB code: 
Top Page protein dna_rna Protein-protein interface(s) pores links
Pore analysis for: 7f9h calculated with MOLE 2.0 PDB id
7f9h
Pores calculated on whole structure Pores calculated excluding ligands

View options
MOLEonline 2.0 manipulation
and
visualization
with HETATM:
without HETATM:
 
4 pores, coloured by radius 6 pores, coloured by radius 6 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.66 1.66 32.9 -2.53 -0.64 32.2 89 5 1 1 0 0 0 0  MSE 53 B DA 5 C DT 6 C DA 7 C DT 8 C CBR 9 C DT
10 C DA 13 D DG 14 D DA 15 D DT 16 D
2 1.66 1.66 33.2 -2.70 -0.70 31.8 92 1 1 1 0 0 0 0  DA 4 C DA 5 C DT 6 C DA 7 C DT 8 C CBR 9 C DT 10
C DA 13 D DG 14 D DA 15 D DT 16 D
3 1.24 1.53 37.5 -2.90 -0.60 26.7 94 4 2 3 3 0 0 0  DT 12 C DA 13 C DG 14 C DA 11 D DT 12 D DA 13 D
DG 14 D
4 1.74 1.74 40.2 -2.25 -0.60 27.3 92 6 1 2 2 0 0 0  MSE 53 A DT 12 C DA 13 C DG 14 C DT 8 D CBR 9 D
DT 10 D
5 1.24 1.46 44.9 -3.05 -0.60 29.2 93 4 2 3 2 0 0 0  DA 5 C DT 6 C DA 7 C DT 8 C DT 12 C DA 13 C DG 14
C DA 4 D DA 11 D DT 12 D DA 13 D DG 14 D DA 15 D
DT 16 D
6 1.76 1.76 51.4 -0.49 -0.71 6.0 99 1 0 0 1 0 0 0  DA 5 C DT 6 C DA 7 C DT 8 C CBR 9 C DT 10 C DT 16
D DA 17 D DT 18 D DT 19 D DT 20 D DC 21 D DG 22 D

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
spacer
spacer