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PDBsum entry 7elm

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Top Page protein dna_rna Protein-protein interface(s) pores links
Pore analysis for: 7elm calculated with MOLE 2.0 PDB id
7elm
Pores calculated on whole structure Pores calculated excluding ligands

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26 pores, coloured by radius 26 pores, coloured by radius 26 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.88 1.88 27.0 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  
2 1.99 2.00 29.2 0.10 -0.15 9.4 86 3 1 2 4 1 0 0  G 32 J C 34 J U 35 J A 36 J
3 1.41 1.82 38.3 -1.54 -0.57 23.6 85 5 3 1 4 0 0 0  
4 1.75 1.75 53.3 -0.48 -0.80 4.6 79 1 1 0 0 0 0 0  
5 1.95 1.96 57.0 -0.44 -0.80 4.0 86 0 1 0 0 0 0 0  
6 2.51 2.51 67.0 -0.79 -0.33 14.9 85 7 2 5 6 2 0 0  C 20 J U 22 J G 23 J C 28 J C 29 J G 30 J C 34 J
U 35 J A 36 J
7 1.71 1.88 79.9 -1.15 -0.43 16.5 73 5 3 3 2 2 0 1  
8 2.20 2.20 91.2 -0.70 -0.48 11.0 85 5 2 4 5 1 1 0  G 32 T C 34 T U 35 T A 36 T
9 1.78 1.89 92.4 -0.77 -0.44 12.5 72 6 3 3 3 2 0 1  
10 1.94 1.95 112.3 -1.27 -0.65 12.9 77 3 5 4 2 2 0 0  
11 1.59 2.11 117.0 -1.75 -0.53 19.9 84 9 6 7 3 2 1 0  
12 2.21 2.26 115.0 -1.07 -0.68 10.5 76 3 4 4 2 2 0 0  
13 1.78 1.78 117.1 -0.71 -0.40 11.5 76 7 4 5 4 2 1 0  
14 2.40 2.40 154.1 -1.29 -0.54 18.6 81 8 11 6 9 4 0 0  C 20 J U 22 J G 23 J
15 2.49 2.52 158.3 -1.39 -0.58 20.6 81 11 12 4 11 2 0 0  C 20 J U 22 J G 23 J
16 1.75 1.95 174.3 -0.97 -0.37 15.1 81 13 6 9 9 3 1 1  G 32 T C 34 T U 35 T A 36 T
17 1.57 2.49 186.6 -1.59 -0.42 20.2 86 19 8 10 8 2 3 0  C 28 J C 29 J G 30 J C 34 J U 35 J A 36 J
18 1.56 1.56 180.0 -1.14 -0.64 12.2 81 8 7 6 4 4 1 0  
19 1.20 1.45 182.5 -0.45 -0.21 11.1 75 9 4 6 12 5 1 2  G 41 T U 42 T U 43 T C 58 T A 59 T G 60 T
20 2.10 2.25 196.6 -1.73 -0.54 23.4 80 12 15 8 13 4 0 0  C 20 J U 22 J G 23 J
21 1.72 1.72 222.0 -1.23 -0.45 11.7 90 12 6 19 11 4 3 0  U 9 T U 10 T C 11 T A 12 T G 15 T C 16 T G 17 T G
18 T U 22 T G 23 T
22 1.94 2.11 224.7 -1.44 -0.49 19.3 88 18 9 12 11 3 2 0  
23 1.98 2.05 240.2 -1.51 -0.52 20.5 87 21 11 11 13 1 2 0  
24 1.52 1.56 248.9 -1.07 -0.34 16.2 88 21 8 19 18 2 5 0  C 28 J C 29 J G 30 J C 34 J U 35 J A 36 J G 32 T
C 34 T
25 1.62 1.62 306.9 -1.22 -0.50 15.3 90 19 12 19 17 2 4 0  C 28 J C 29 J G 30 J C 34 J U 35 J A 36 J U 9 T U
10 T C 11 T A 12 T G 15 T C 16 T G 17 T G 18 T
26 1.54 1.61 367.2 -1.43 -0.44 20.1 85 29 17 20 21 4 3 0  G 32 T C 34 T

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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