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PDBsum entry 7elc

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Top Page protein dna_rna metals Protein-protein interface(s) pores links
Pore analysis for: 7elc calculated with MOLE 2.0 PDB id
7elc
Pores calculated on whole structure Pores calculated excluding ligands

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17 pores, coloured by radius 13 pores, coloured by radius 13 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.53 1.52 30.9 -1.45 -0.41 12.1 84 4 4 7 3 4 3 0  G 19 C
2 1.36 1.39 40.2 0.15 0.12 13.4 73 3 2 1 7 2 0 0  
3 1.68 2.66 43.9 -1.33 -0.28 17.2 85 4 2 5 3 1 2 0  
4 1.36 1.38 54.9 0.36 0.21 11.2 79 3 2 3 9 2 2 0  
5 1.17 1.43 63.4 1.23 0.37 6.3 78 3 3 4 10 1 1 1  
6 1.61 1.63 69.3 -2.63 -0.67 27.3 79 18 8 6 2 2 0 0  
7 1.15 2.39 76.7 -1.84 -0.56 23.4 87 11 6 3 6 0 0 0  C 13 C U 14 C
8 1.53 2.86 77.4 -1.72 -0.56 17.7 88 12 10 8 4 3 3 0  G 19 C
9 1.34 1.39 95.7 0.04 0.05 13.9 82 2 4 6 12 2 3 0  
10 1.24 2.15 97.5 -2.27 -0.63 23.4 84 14 6 8 4 2 0 0  C 13 C U 14 C
11 1.42 1.42 106.9 -2.39 -0.49 27.5 81 11 6 5 7 0 3 1  
12 1.40 3.28 119.5 -2.46 -0.59 26.7 86 15 8 8 4 0 2 1  C 13 C U 14 C
13 1.83 2.97 130.1 -2.27 -0.49 26.3 81 18 6 12 6 2 1 1  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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