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PDBsum entry 7ed5
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Pore analysis for: 7ed5 calculated with  MOLE 2.0
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PDB id
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7ed5
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Pores calculated on whole structure |
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Pores calculated excluding ligands
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17 pores,
coloured by radius |
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17 pores,
coloured by radius
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17 pores,
coloured as in
list below
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Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. |
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Free R
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Length
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HPathy
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HPhob
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Polar
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Rel Mut
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Residue..type
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Ligands
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Radius |
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1 |
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3.73 |
3.89 |
28.2 |
-1.30 |
-0.72 |
12.4 |
85 |
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4 |
0 |
1 |
0 |
0 |
0 |
0 |
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U 17 I G 18 I U 19 I G 20 I A 21 I U 34 J A 35 J
A 36 J U 37 J
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2 |
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1.32 |
1.37 |
29.2 |
-0.49 |
-0.02 |
8.7 |
77 |
1 |
1 |
2 |
3 |
2 |
2 |
0 |
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3 |
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3.35 |
3.35 |
31.5 |
-0.69 |
-0.74 |
6.8 |
84 |
2 |
0 |
0 |
1 |
1 |
0 |
0 |
A 21 I G 22 I A 23 I U 24 I U 25 I A 30 J A 31 J
C 32 J U 33 J U 34 J A 35 J
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4 |
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3.57 |
3.57 |
33.8 |
-0.40 |
-0.80 |
3.4 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
G 13 I C 14 I U 15 I A 16 I U 17 I G 18 I U 19 I
G 20 I A 21 I G 22 I A 23 I U 24 I U 25 I A 30 J
A 31 J C 32 J U 33 J U 34 J A 35 J A 36 J U 37 J
U 39 J C 40 J A 41 J
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5 |
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3.63 |
3.63 |
34.5 |
-0.46 |
-0.57 |
7.3 |
89 |
2 |
0 |
1 |
3 |
1 |
0 |
0 |
A 21 I G 22 I A 23 I U 24 I U 25 I A 30 J A 31 J
C 32 J U 33 J U 34 J A 35 J
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6 |
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1.43 |
1.43 |
35.4 |
-1.16 |
-0.58 |
15.8 |
82 |
4 |
1 |
0 |
2 |
0 |
0 |
0 |
U 15 I A 16 I U 17 I U 37 J C 38 J U 39 J C 40 J
G 46 J
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7 |
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1.21 |
1.57 |
36.0 |
-1.23 |
0.08 |
14.1 |
75 |
5 |
2 |
1 |
3 |
3 |
2 |
0 |
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8 |
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3.61 |
3.61 |
38.1 |
-0.63 |
-0.79 |
4.5 |
93 |
1 |
0 |
1 |
0 |
0 |
0 |
0 |
G 13 I C 14 I U 15 I A 16 I U 17 I G 18 I U 19 I
G 20 I A 21 I U 34 J A 35 J A 36 J U 37 J U 39 J
C 40 J A 41 J
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9 |
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1.99 |
2.16 |
41.1 |
-0.53 |
-0.62 |
5.0 |
85 |
1 |
0 |
1 |
2 |
2 |
0 |
0 |
A 21 I G 22 I A 23 I U 24 I U 25 I A 26 I A 31 J
C 32 J U 33 J U 34 J A 35 J
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10 |
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2.43 |
2.42 |
50.3 |
-1.55 |
-0.43 |
15.7 |
89 |
6 |
1 |
3 |
3 |
0 |
0 |
0 |
AT9 1005 A U 24 I U 25 I A 26 I A 27 I U 29 I U
30 I A 31 I U 32 I AT9 101 I C 26 J A 28 J U 29 J
A 30 J A 31 J C 32 J
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11 |
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1.90 |
1.90 |
57.8 |
-1.82 |
-0.60 |
22.8 |
85 |
9 |
2 |
2 |
1 |
0 |
0 |
0 |
AT9 1005 A U 25 I A 26 I A 27 I G 28 I U 29 I U
30 I A 31 I U 32 I AT9 101 I C 25 J C 26 J A 36 J
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12 |
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1.40 |
2.46 |
59.4 |
-0.98 |
-0.19 |
20.8 |
85 |
9 |
4 |
3 |
6 |
1 |
0 |
0 |
AT9 1005 A U 30 I A 31 I U 32 I AT9 101 I C 24 J
C 25 J C 26 J
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13 |
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1.36 |
1.45 |
63.0 |
-0.67 |
-0.61 |
9.0 |
83 |
3 |
2 |
1 |
2 |
1 |
0 |
0 |
U 15 I A 16 I U 17 I G 18 I U 19 I G 20 I A 21 I
U 34 J A 35 J A 36 J U 37 J U 39 J C 40 J A 41 J
G 46 J
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14 |
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1.40 |
1.54 |
63.8 |
-0.86 |
-0.17 |
19.1 |
86 |
8 |
2 |
3 |
5 |
0 |
0 |
0 |
U 25 I A 26 I A 27 I G 28 I U 29 I C 24 J C 25 J
A 36 J
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15 |
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1.40 |
1.54 |
68.4 |
-0.94 |
-0.15 |
13.7 |
86 |
6 |
1 |
4 |
7 |
1 |
0 |
0 |
U 24 I U 25 I A 26 I A 27 I U 29 I U 30 I C 24 J
C 25 J U 29 J A 30 J A 31 J C 32 J
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16 |
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1.44 |
1.45 |
76.6 |
-0.56 |
-0.65 |
6.7 |
86 |
1 |
1 |
1 |
3 |
1 |
0 |
0 |
U 15 I A 16 I U 17 I G 18 I U 19 I G 20 I A 21 I
G 22 I A 23 I U 24 I U 25 I A 26 I A 31 J C 32 J
U 33 J U 34 J A 35 J A 36 J U 37 J U 39 J C 40 J
A 41 J G 46 J
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17 |
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1.40 |
1.54 |
78.8 |
-0.95 |
-0.30 |
14.2 |
88 |
6 |
2 |
6 |
7 |
0 |
0 |
0 |
U 19 I G 20 I A 21 I G 28 I U 29 I C 24 J C 25 J
U 33 J U 34 J A 35 J
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Residue-type_colouring |
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Positive
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Negative
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Neutral
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Aliphatic
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Aromatic
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Pro & Gly
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Cysteine
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H,K,R
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D,E
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S,T,N,Q
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A,V,L,I,M
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F,Y,W
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P,G
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C
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MOLE 2.0 program