PDBsum entry 7dft

Pore analysis for: 7dft calculated with

MOLE 2.0

PDB id

7dft

Pores calculated on whole structure

Pores calculated excluding ligands

View options

MOLEonline 2.0 manipulation
and
visualization
with HETATM:

without HETATM:

13 pores, coloured by radius

17 pores, coloured by radius

17 pores, coloured as in
list below

Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.

Pores

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

1.14

1.14

41.2

-0.72

-0.43

12.8

85

6

2

2

6

3

0

0

2

1.35

1.56

51.3

-1.14

-0.36

19.2

87

4

5

3

4

1

1

0

3

1.18

2.06

76.4

-0.66

-0.38

10.2

89

1

7

3

9

0

5

0

4

1.51

1.61

76.6

-0.75

-0.35

12.0

90

3

7

4

10

0

4

0

5

1.51

1.60

105.2

-0.29

-0.28

8.6

90

5

5

4

17

1

3

0

6

1.35

1.42

108.6

-0.38

-0.29

9.7

92

5

4

4

13

1

2

0

7

1.44

1.59

109.4

-0.43

-0.30

9.4

90

5

6

4

16

1

3

0

8

1.34

1.45

117.8

-0.40

-0.30

10.0

90

4

6

4

13

1

3

0

9

1.14

1.29

121.9

-0.74

-0.13

14.6

87

7

8

4

15

3

3

0

10

1.46

1.60

147.3

-0.70

-0.23

13.7

89

6

8

4

17

0

5

0

11

1.39

1.82

169.1

-0.78

-0.28

14.1

88

10

9

5

16

2

3

0

CL 302 A

12

1.48

1.58

173.5

-0.46

-0.15

12.0

89

6

10

5

22

1

6

0

13

1.34

1.57

182.5

-0.45

-0.13

12.4

89

5

10

5

20

1

6

0

14

1.35

1.41

183.2

-0.42

-0.12

11.9

89

6

9

5

20

1

5

0

15

1.34

1.63

192.5

-0.51

-0.12

12.8

89

5

11

5

20

1

6

0

16

1.52

2.03

212.8

-0.99

-0.22

17.5

89

12

11

6

18

2

4

0

17

1.42

1.42

223.8

-1.00

-0.21

17.6

88

11

13

6

18

2

5

0

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Pores were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.