PDBsum entry 7dd5 Go to PDB code:  Pore analysis for: 7dd5 calculated with MOLE 2.0 PDB id 7dd5 Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   18 pores, coloured by radius 20 pores, coloured by radius 20 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.81 2.67 39.3 -1.88 -0.59 20.1 78 2 6 2 0 1 2 2  NAG 1 F NAG 2 F 2 1.27 1.28 41.0 1.62 0.39 4.5 70 1 1 2 9 2 0 1   3 1.66 1.91 42.9 0.51 0.25 4.3 68 0 1 2 7 3 2 2  YP1 1108 B 4 1.64 1.69 67.3 -0.79 -0.30 10.9 83 4 4 8 6 7 2 0  CA 1103 A TRP 1108 A 5 1.59 1.64 71.0 -1.70 -0.53 18.6 83 4 9 11 4 6 2 0  CA 1103 A TRP 1108 A 6 1.14 1.22 72.2 2.27 0.77 3.0 71 1 0 1 11 7 0 0   7 1.29 1.32 76.3 -0.27 -0.09 4.5 75 0 4 6 4 7 2 3   8 1.25 1.26 81.1 -1.64 -0.31 18.1 75 5 7 3 3 6 3 1   9 1.77 3.40 82.2 -1.70 -0.51 22.9 80 6 11 5 5 4 0 0   10 1.57 2.50 96.4 -1.34 -0.41 21.2 80 5 13 6 6 4 0 2  CA 1102 A 11 1.67 1.91 99.9 0.32 0.32 4.3 72 1 3 6 12 8 2 3  YP1 1108 B 12 1.96 2.03 99.0 -2.09 -0.29 28.6 81 7 11 4 4 3 0 0  NAG 1107 A NAG 1 C NAG 2 C 13 1.46 2.45 102.5 -0.79 0.12 16.8 72 5 6 3 11 6 3 1  YP1 1108 B 14 1.49 2.41 111.5 -1.17 -0.14 14.3 73 5 8 5 6 8 3 2   15 1.24 3.04 122.0 0.42 0.26 5.7 78 1 6 7 15 11 1 1  YP1 1109 A 16 1.20 1.49 145.2 -1.47 -0.18 20.1 76 7 11 4 7 8 3 2   17 1.23 2.10 150.4 -0.48 0.16 13.8 78 7 9 5 16 11 2 0  YP1 1109 A 18 1.21 1.49 152.3 -1.64 -0.49 24.9 81 6 22 6 9 4 1 0  CA 1102 A 19 1.44 1.44 178.0 1.05 0.58 4.8 69 2 4 6 23 17 1 1  YP1 1109 A YP1 1108 B 20 1.33 1.98 195.8 1.17 0.64 4.4 75 2 5 8 24 16 1 2  YP1 1109 A YP1 1108 B Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.