PDBsum entry 7d7c Go to PDB code:  Pore analysis for: 7d7c calculated with MOLE 2.0 PDB id 7d7c Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   26 pores, coloured by radius 28 pores, coloured by radius 28 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 3.13 3.31 97.4 -1.98 -0.53 20.4 84 8 9 8 9 0 0 0   2 1.42 1.72 103.9 -2.35 -0.54 25.0 88 11 11 10 7 0 1 0   3 2.28 2.61 126.1 -1.51 -0.40 19.2 83 12 11 8 9 4 3 0  DT 40 N DA 41 N DC 42 N DA 13 T 4 1.92 2.14 127.1 -1.82 -0.49 17.4 83 11 9 9 7 4 2 0  DA 22 N DG 23 N DT 26 T DA 27 T 5 2.39 3.29 126.4 -1.92 -0.55 21.7 82 13 9 7 7 1 4 0  DT 40 N DA 41 N DC 42 N DA 13 T 6 2.56 3.93 128.8 -1.72 -0.28 23.5 84 13 10 5 10 2 1 0   7 2.35 3.33 137.1 -1.79 -0.36 24.2 83 16 13 6 10 3 3 0  DT 40 N DA 41 N DC 42 N DA 13 T 8 2.28 2.88 142.1 -2.04 -0.56 20.1 84 20 9 13 7 3 5 0   9 2.38 2.34 146.8 -2.31 -0.54 24.7 83 21 11 11 8 2 6 0   10 2.21 2.54 149.8 -2.15 -0.56 25.1 84 10 12 5 5 1 5 0  DC 42 N 11 1.17 1.20 161.7 -1.67 -0.47 19.5 84 19 11 13 11 3 6 0   12 1.21 1.27 164.9 -1.73 -0.35 26.4 79 12 14 4 13 3 1 0  DG 38 N DA 39 N DT 40 N DA 41 N DC 42 N DC 9 T DT 24 T DT 26 T DC 28 T 13 1.85 2.07 171.8 -2.33 -0.50 28.5 80 15 12 6 6 3 2 0  DA 22 N DG 23 N DG 38 N DA 39 N DT 40 N DA 41 N DC 42 N DC 9 T DT 24 T DT 26 T DA 27 T 14 1.48 1.44 181.0 -1.28 -0.30 18.0 83 21 10 12 19 3 6 0  DT 26 T DC 28 T 15 1.23 1.55 192.1 -0.84 -0.17 19.7 86 19 10 8 22 3 2 1   16 2.11 2.35 187.9 -1.75 -0.41 19.0 84 23 8 14 12 3 7 0  DA 22 N DG 23 N DT 26 T DA 27 T 17 1.18 2.76 200.5 -1.62 -0.29 20.6 80 10 11 7 10 5 6 0  DG 50 N DC 51 N DC 52 N DG 5 T DC 6 T 18 1.21 2.74 211.3 -1.57 -0.38 19.7 81 19 12 10 11 6 5 0  DA 39 N DT 40 N DA 49 N DG 50 N DC 51 N DT 7 T DT 8 T DC 9 T DA 10 T DG 11 T DT 12 T DA 13 T 19 1.22 2.65 224.5 -1.39 -0.22 22.2 79 18 14 7 18 6 3 0  DG 38 N DA 49 N DG 50 N DC 51 N DT 7 T DT 8 T DC 9 T DT 24 T DT 26 T DC 28 T 20 1.36 1.57 220.5 -1.74 -0.33 23.6 81 24 14 8 11 6 6 0  DA 39 N DT 40 N DA 49 N DG 50 N DC 51 N DT 7 T DT 8 T DC 9 T DA 10 T DG 11 T DT 12 T DA 13 T 21 2.28 2.65 243.2 -1.95 -0.52 20.1 81 20 14 13 9 5 11 0  DT 40 N DC 42 N DT 43 N DG 44 N DG 5 T DC 6 T DT 7 T DT 8 T DC 9 T DA 10 T DG 11 T DT 12 T DA 13 T 22 1.23 1.55 243.4 -0.97 -0.22 20.0 85 24 18 12 29 3 3 1  DT 40 N DA 41 N DC 42 N DA 13 T 23 1.04 1.32 245.2 -1.61 -0.35 21.6 79 23 16 10 14 7 10 0  DT 40 N DC 42 N DT 43 N DG 44 N DG 5 T DC 6 T DT 7 T DT 8 T DC 9 T DA 10 T DG 11 T DT 12 T DA 13 T 24 2.37 2.37 254.5 -2.03 -0.46 23.0 81 26 16 11 9 5 11 0  DT 40 N DC 42 N DT 43 N DG 44 N DG 5 T DC 6 T DT 7 T DT 8 T DC 9 T DA 10 T DG 11 T DT 12 T DA 13 T 25 1.16 1.14 270.8 -0.57 -0.07 18.7 82 20 16 11 25 6 3 0   26 1.28 2.54 259.2 -1.33 -0.34 20.4 85 29 16 17 26 2 6 1   27 1.93 2.11 271.5 -2.11 -0.50 23.3 81 22 14 12 9 4 10 0  DA 22 N DG 23 N DG 38 N DA 39 N DT 40 N DC 42 N DT 43 N DG 44 N DG 5 T DC 6 T DT 7 T DT 8 T DC 9 T DT 24 T DT 26 T DA 27 T 28 1.24 1.73 279.3 -0.87 -0.22 18.9 84 22 17 11 30 3 1 1   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.