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PDBsum entry 7d0f
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Tunnel analysis for: 7d0f calculated with  MOLE 2.0
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PDB id
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7d0f
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Tunnels calculated on whole structure |
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Tunnels calculated excluding ligands
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12 tunnels,
coloured by tunnel radius |
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12 tunnels,
coloured by
tunnel radius
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12 tunnels,
coloured as in
list below
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Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. |
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Free R
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Length
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HPathy
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HPhob
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Polar
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Rel Mut
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Residue..type
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Ligands
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Radius |
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1 |
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1.16 |
1.16 |
33.5 |
-0.40 |
-0.80 |
3.4 |
0 |
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0 |
0 |
0 |
0 |
0 |
0 |
0 |
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G 5 A C 6 A A 386 A G 471 A A 472 A A 475 A C 476
A G 489 A A 490 A G 501 A A 515 A A 517 A G 518 A
U 2419 A A 2420 A G 2422 A U 2423 A A 2424 A C
2425 A G 2426 A
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2 |
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1.19 |
1.19 |
43.2 |
-0.40 |
-0.80 |
3.4 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
G 5 A C 6 A A 386 A G 471 A C 2401 A G 2402 A U
2403 A A 2404 A C 2407 A G 2415 A G 2416 A U 2419
A A 2420 A C 2421 A G 2422 A U 2423 A A 2424 A C
2425 A
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3 |
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1.17 |
1.17 |
45.8 |
-0.40 |
-0.80 |
3.4 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
G 5 A C 6 A C 7 A C 8 A C 383 A U 384 A A 386 A G
471 A A 472 A U 488 A G 489 A A 517 A G 518 A A
2404 A U 2419 A A 2420 A G 2422 A U 2423 A A 2424
A
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4 |
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1.20 |
1.20 |
46.5 |
-0.40 |
-0.80 |
3.4 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
G 5 A C 6 A A 386 A G 471 A A 472 A G 473 A A 525
A G 526 A U 527 A U 2419 A A 2420 A G 2422 A U
2423 A A 2424 A C 2425 A G 2426 A G 2427 A U 2428
A U 2429 A C 2430 A C 2431 A
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5 |
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1.17 |
1.17 |
46.9 |
-0.40 |
-0.80 |
3.4 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
G 5 A C 6 A U 182 A A 185 A A 186 A U 281 A A 386
A G 471 A C 2400 A C 2401 A G 2402 A G 2416 A G
2417 A U 2419 A A 2420 A C 2421 A G 2422 A U 2423
A A 2424 A C 2425 A
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6 |
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2.06 |
2.06 |
19.3 |
-0.40 |
-0.80 |
3.4 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
A 438 A G 439 A C 2450 A A 2452 A U 2454 A U 2465
A G 2466 A
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7 |
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1.12 |
1.12 |
26.5 |
-0.40 |
-0.80 |
3.4 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
C 2451 A A 2452 A G 2453 A U 2454 A U 2463 A G
2464 A U 2465 A
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8 |
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1.47 |
1.47 |
41.6 |
-0.40 |
-0.80 |
3.4 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
G 433 A C 434 A U 437 A A 438 A G 439 A U 443 A A
444 A G 445 A U 456 A C 2450 A A 2452 A U 2454 A
G 2464 A U 2465 A G 2466 A
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9 |
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2.54 |
2.54 |
16.1 |
-0.40 |
-0.80 |
3.4 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
A 400 A A 401 A A 402 A C 403 A A 405 A G 406 A A
407 A A 454 A A 455 A U 456 A C 457 A G 460 A
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10 |
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1.49 |
1.49 |
17.5 |
-0.40 |
-0.80 |
3.4 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
U 535 A A 536 A A 541 A U 593 A U 594 A U 595 A A
597 A A 2387 A
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11 |
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1.49 |
1.49 |
18.1 |
-0.40 |
-0.80 |
3.4 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
A 536 A A 539 A A 540 A A 541 A A 591 A U 593 A U
594 A U 595 A
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12 |
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1.49 |
1.49 |
18.2 |
-0.40 |
-0.80 |
3.4 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
A 536 A A 540 A A 541 A G 589 A C 590 A A 591 A U
593 A U 594 A U 595 A
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Residue-type_colouring |
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Positive
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Negative
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Neutral
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Aliphatic
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Aromatic
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Pro & Gly
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Cysteine
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H,K,R
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D,E
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S,T,N,Q
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A,V,L,I,M
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F,Y,W
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P,G
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C
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MOLE 2.0 program