PDBsum entry 7d0c Go to PDB code:  Pore analysis for: 7d0c calculated with MOLE 2.0 PDB id 7d0c Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   19 pores, coloured by radius 27 pores, coloured by radius 27 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.71 1.71 58.2 -1.01 -0.66 5.2 90 1 0 7 2 0 2 0   2 1.98 1.98 61.4 -2.26 -0.69 28.9 80 7 5 4 1 0 3 1   3 1.29 1.35 79.0 -1.58 -0.37 19.1 77 8 7 5 4 5 3 0   4 1.33 1.59 83.8 -1.31 -0.37 18.1 81 4 7 5 5 1 4 1  NAG 1 N NAG 2 N 5 1.17 1.35 91.0 -0.76 -0.33 15.3 84 6 5 7 14 0 0 0   6 1.20 1.36 112.9 -0.86 -0.36 14.3 80 7 4 7 10 4 3 0   7 1.17 1.33 135.4 -1.23 -0.45 17.2 87 9 7 11 9 1 1 0   8 1.68 1.72 132.0 -1.48 -0.28 19.4 81 5 9 5 7 7 3 0  NAG 1404 C 9 1.99 2.15 154.7 -1.00 -0.49 11.2 92 8 9 18 8 2 2 0   10 1.54 2.24 155.1 -0.96 -0.24 13.8 84 9 7 12 12 6 2 0   11 1.33 1.66 158.8 -1.18 -0.26 13.0 81 7 6 11 7 7 4 1  NAG 1403 C NAG 1404 C NAG 1 N NAG 2 N 12 1.63 2.00 188.8 -1.35 -0.44 17.4 85 15 15 17 12 6 5 0   13 1.67 1.94 185.2 -1.39 -0.47 12.8 87 7 7 18 9 7 4 0  NAG 1403 B 14 1.49 2.07 200.9 -1.13 -0.34 14.8 87 13 13 19 14 5 3 0   15 1.49 1.42 212.6 -1.70 -0.55 12.8 85 12 9 24 13 7 3 0  NAG 1403 B 16 1.19 2.45 217.6 -0.62 -0.18 13.7 86 13 10 20 27 5 2 0  NAG 1 Q 17 1.09 1.09 237.8 -0.49 0.01 12.0 82 10 11 16 19 15 2 1  NAG 1403 A NAG 1404 A 18 1.20 1.33 237.1 -0.42 -0.11 11.4 83 5 8 12 11 9 3 0   19 1.18 1.36 237.5 -1.12 -0.33 14.6 85 13 11 20 17 5 3 0   20 1.33 1.51 249.4 -1.17 -0.43 14.6 83 15 12 18 23 4 3 0   21 1.33 1.39 245.6 -1.63 -0.50 16.5 81 17 12 18 11 11 6 0  NAG 1403 B 22 1.11 3.81 270.5 -0.63 -0.30 9.5 83 9 6 18 17 8 7 1   23 1.52 2.24 287.5 -1.12 -0.37 13.5 86 14 12 25 18 8 6 0  NAG 1404 B 24 1.22 1.55 307.9 -0.59 -0.04 11.0 80 11 9 20 20 18 6 0  NAG 1403 A 25 1.18 1.47 339.4 -0.88 -0.22 12.9 83 14 14 22 16 15 5 0  NAG 1403 A NAG 1404 A 26 1.28 2.10 354.3 -0.84 -0.15 12.3 80 12 11 19 21 20 6 0  NAG 1 U NAG 2 U 27 1.22 1.33 428.3 -0.89 -0.30 14.0 85 20 22 30 25 14 8 0  NAG 1403 A NAG 1404 A Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.