PDBsum entry 7d0b Go to PDB code:  Pore analysis for: 7d0b calculated with MOLE 2.0 PDB id 7d0b Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   33 pores, coloured by radius 33 pores, coloured by radius 33 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.43 2.10 25.1 -0.61 0.17 16.4 84 3 1 3 5 2 0 0   2 3.13 3.93 28.1 -1.23 -0.22 11.9 77 2 2 3 2 2 2 2   3 1.23 1.24 29.0 -0.56 0.02 10.4 87 1 1 4 2 2 0 0   4 2.82 3.20 30.5 -1.11 -0.46 9.3 92 1 3 4 3 1 0 0   5 2.22 2.48 37.9 -0.89 -0.31 16.0 85 5 4 4 9 0 0 0   6 3.13 3.56 41.3 -1.24 -0.30 13.1 75 3 2 3 2 2 2 2   7 1.34 2.55 48.6 -1.11 -0.38 12.9 86 3 2 6 2 3 1 0   8 1.56 1.69 62.6 -1.61 -0.34 18.9 78 6 7 5 4 5 3 0   9 1.54 1.66 62.6 -1.61 -0.38 18.1 77 6 6 4 4 5 3 0   10 1.61 1.79 63.1 -1.45 -0.37 15.9 76 6 5 4 4 5 4 0   11 1.55 1.68 72.6 -1.09 -0.39 15.6 80 6 5 5 5 4 3 0   12 1.31 1.59 77.0 -0.50 -0.14 15.0 88 4 2 4 7 1 0 0  NAG 1408 B 13 2.24 2.64 88.9 -1.15 -0.49 12.4 89 7 4 9 6 2 0 0   14 1.35 2.53 91.7 -1.49 -0.25 20.8 76 5 6 2 4 5 3 0  NAG 1405 A 15 1.36 2.62 100.1 -1.41 -0.41 14.2 84 7 4 11 6 5 1 0   16 2.41 3.97 99.6 -1.53 -0.52 17.1 88 6 6 11 2 4 2 0  NAG 1404 A 17 2.73 3.11 101.8 -1.92 -0.42 19.2 87 8 10 9 6 2 2 0  NAG 1403 C NAG 1404 C 18 1.31 1.31 111.0 -1.20 -0.25 15.6 87 7 7 12 7 4 2 0   19 1.33 1.34 112.4 -1.73 -0.27 19.5 81 10 9 9 7 5 3 0   20 2.34 2.73 112.5 -1.30 -0.46 14.5 89 6 11 11 8 1 2 0  NAG 1403 C NAG 1404 C 21 1.33 1.38 114.3 -1.24 -0.36 14.7 86 7 9 13 8 4 1 0   22 2.45 2.71 120.0 -1.55 -0.45 15.4 83 9 11 10 7 3 4 0   23 1.38 2.71 128.3 -1.56 -0.26 18.2 82 9 8 13 8 8 3 0   24 2.46 3.04 130.2 -1.24 -0.39 17.9 80 11 12 10 14 3 1 2   25 2.29 2.31 132.9 -0.99 -0.33 11.4 86 6 7 10 11 5 1 0   26 1.33 1.39 138.8 -1.37 -0.28 17.6 80 7 10 9 7 8 4 0  NAG 1404 A 27 1.84 1.98 147.3 -1.26 -0.42 16.1 89 7 14 15 11 2 3 0  NAG 1403 C NAG 1404 C 28 1.41 1.46 188.6 -1.18 -0.40 15.1 82 13 12 14 12 7 4 0   29 1.65 2.10 199.6 -1.52 -0.43 18.4 80 18 14 15 11 8 4 2   30 1.53 1.66 216.3 -1.51 -0.44 17.7 79 18 13 15 12 10 5 0   31 1.30 1.99 28.8 0.00 0.28 5.7 73 1 1 3 5 3 1 0   32 2.49 3.46 36.6 -2.75 -0.36 23.8 81 4 2 4 0 3 0 0   33 1.27 1.41 48.3 -0.13 0.12 3.7 75 0 1 5 5 4 0 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.