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PDBsum entry 7cyc
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Pore analysis for: 7cyc calculated with  MOLE 2.0
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PDB id
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7cyc
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Pores calculated on whole structure |
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Pores calculated excluding ligands
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30 pores,
coloured by radius |
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6 pores,
coloured by radius
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6 pores,
coloured as in
list below
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Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. |
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Free R
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Length
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HPathy
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HPhob
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Polar
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Rel Mut
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Residue..type
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Ligands
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Radius |
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1 |
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4.39 |
5.86 |
35.5 |
-0.17 |
-0.04 |
9.9 |
86 |
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4 |
3 |
1 |
4 |
2 |
0 |
0 |
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NAG 1 L NAG 2 L BMA 3 L MAN 6 L MAN 7 L
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2 |
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3.83 |
3.85 |
61.9 |
-1.55 |
-0.32 |
10.2 |
81 |
2 |
5 |
10 |
3 |
6 |
1 |
0 |
NAG 1 L NAG 2 L BMA 3 L MAN 6 L MAN 7 L
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3 |
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1.53 |
1.55 |
98.9 |
-1.53 |
-0.45 |
8.8 |
82 |
4 |
4 |
16 |
8 |
5 |
2 |
0 |
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4 |
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1.30 |
1.28 |
123.5 |
-1.04 |
-0.04 |
10.5 |
83 |
5 |
6 |
18 |
8 |
10 |
3 |
0 |
NAG 1 H NAG 2 H BMA 3 H MAN 6 H MAN 7 H NAG 1 L N
AG 2 L BMA 3 L MAN 6 L MAN 7 L
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5 |
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1.41 |
1.37 |
131.1 |
-0.93 |
-0.02 |
10.4 |
82 |
7 |
6 |
18 |
8 |
10 |
3 |
0 |
NAG 1 D NAG 2 D BMA 3 D MAN 6 D MAN 7 D NAG 1 L N
AG 2 L BMA 3 L MAN 6 L MAN 7 L
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6 |
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1.43 |
1.50 |
166.8 |
-0.80 |
0.03 |
8.9 |
81 |
7 |
6 |
23 |
10 |
15 |
4 |
0 |
NAG 1 D NAG 2 D BMA 3 D MAN 6 D MAN 7 D NAG 1 H N
AG 2 H BMA 3 H MAN 6 H MAN 7 H
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Residue-type_colouring |
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Positive
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Negative
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Neutral
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Aliphatic
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Aromatic
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Pro & Gly
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Cysteine
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H,K,R
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D,E
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S,T,N,Q
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A,V,L,I,M
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F,Y,W
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P,G
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C
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MOLE 2.0 program