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PDBsum entry 7cyc
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Top Page protein ligands Protein-protein interface(s) tunnels links
Tunnel analysis for: 7cyc calculated with MOLE 2.0 PDB id
7cyc
Tunnels calculated on whole structure Tunnels calculated excluding ligands
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13 tunnels, coloured by tunnel radius 41 tunnels, coloured by tunnel radius 41 tunnels, coloured as in
list below
Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.
Tunnels
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.29 1.29 33.1 0.02 0.09 8.7 80 4 0 4 6 2 0 1  NAG 1 K NAG 2 K
2 1.29 1.29 33.3 0.02 0.12 9.1 80 4 0 4 6 2 0 1  NAG 1 G NAG 2 G
3 1.29 1.29 33.3 0.03 0.11 9.1 80 4 1 4 6 2 0 1  NAG 1 O NAG 2 O
4 1.29 1.28 40.9 1.39 0.41 5.0 75 3 1 0 12 3 1 1  
5 1.30 1.29 41.1 1.31 0.36 5.3 75 3 1 0 12 3 1 1  
6 1.30 1.29 41.4 1.39 0.38 4.8 75 3 1 0 12 3 1 1  
7 1.18 1.15 52.3 0.65 0.21 8.0 79 3 2 5 9 3 1 1  
8 1.15 1.15 52.5 0.48 0.15 8.3 79 3 2 4 9 3 1 1  
9 1.15 1.15 52.5 0.51 0.17 8.3 79 3 2 4 9 3 1 1  
10 1.18 1.17 54.7 1.40 0.28 2.7 86 2 0 3 8 2 0 1  NAG 1214 C
11 1.18 1.17 54.7 1.40 0.28 2.7 86 2 0 3 8 2 0 1  NAG 1214 A
12 1.18 1.17 54.7 1.40 0.28 2.7 86 2 0 3 8 2 0 1  NAG 1214 B
13 1.28 1.29 77.5 0.07 0.15 9.4 81 4 3 8 10 6 3 1  
14 1.33 1.32 78.0 0.07 0.14 9.5 81 4 3 8 10 6 3 1  
15 1.29 1.29 77.9 0.10 0.14 9.4 81 4 3 8 10 6 3 1  
16 1.31 1.35 83.9 0.35 0.24 8.3 79 4 2 7 12 7 1 1  
17 1.27 2.44 86.3 0.21 0.20 9.2 80 4 3 7 11 7 1 1  
18 1.27 2.33 86.3 0.22 0.21 8.9 80 4 3 7 11 7 1 1  
19 1.30 1.33 94.7 -1.12 0.04 14.1 76 8 2 8 8 10 2 1  NAG 1 G NAG 2 G NAG 1 O
20 1.31 1.33 94.9 -1.13 0.03 14.1 76 8 2 8 8 10 2 1  NAG 1 K NAG 2 K NAG 1 O
21 1.31 1.33 95.0 -1.14 0.02 14.4 76 8 2 8 8 10 2 1  NAG 1 K NAG 1 O NAG 2 O
22 1.31 1.33 95.0 -1.06 0.03 13.7 76 8 2 8 8 10 2 1  NAG 1 G NAG 1 O NAG 2 O
23 1.28 1.30 94.6 -1.10 0.06 14.5 76 8 2 8 8 10 2 1  NAG 1 G NAG 2 G NAG 1 K
24 1.28 1.30 94.9 -1.13 0.06 14.7 76 8 2 8 8 10 2 1  NAG 1 G NAG 1 K NAG 2 K
25 1.28 1.30 100.8 -1.38 -0.14 12.5 79 9 3 12 10 8 2 1  NAG 1 K
26 1.28 1.28 101.0 -1.33 -0.15 12.2 79 9 3 12 10 8 2 1  NAG 1 K
27 1.30 1.29 101.8 -1.40 -0.15 12.7 79 9 3 12 10 8 2 1  NAG 1 O
28 1.28 1.31 100.8 -1.26 -0.10 12.9 79 9 3 12 10 8 2 1  NAG 1 G
29 1.28 1.29 101.0 -1.34 -0.15 11.9 79 9 3 12 10 8 2 1  NAG 1 G
30 1.28 1.31 101.0 -1.32 -0.13 12.5 79 9 3 12 10 8 2 1  NAG 1 K
31 1.28 1.31 101.0 -1.29 -0.11 12.8 79 9 3 12 10 8 2 1  NAG 1 G
32 1.27 1.30 101.6 -1.36 -0.13 13.2 79 9 3 12 10 8 2 1  NAG 1 O
33 1.27 1.30 101.8 -1.39 -0.15 12.9 79 9 3 12 10 8 2 1  NAG 1 O
34 1.28 1.29 111.6 -0.64 0.07 11.5 80 8 1 13 11 8 2 1  NAG 1215 B NAG 1 O
35 1.28 1.28 111.3 -0.60 0.08 11.4 80 8 1 13 11 8 2 1  NAG 1215 A NAG 1 K
36 1.27 1.45 114.7 -0.63 0.09 12.0 80 8 3 11 12 8 4 1  NAG 1 G
37 1.19 1.54 113.4 -0.64 0.09 12.4 80 8 1 13 11 9 2 1  NAG 1215 A NAG 1 K
38 1.21 1.56 116.8 -0.69 0.03 13.7 78 8 5 7 11 11 2 1  NAG 1212 B NAG 1 G
39 1.20 1.55 121.7 -0.35 -0.15 12.7 83 9 7 9 20 4 0 1  
40 1.20 2.50 122.4 -0.32 -0.14 12.6 83 9 7 9 20 4 0 1  
41 1.21 1.55 121.6 -0.32 -0.14 12.3 82 9 7 9 20 4 0 1  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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