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PDBsum entry 7cx7

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Pore analysis for: 7cx7 calculated with MOLE 2.0 PDB id
7cx7
Pores calculated on whole structure Pores calculated excluding ligands

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16 pores, coloured by radius 24 pores, coloured by radius 24 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.20 1.20 25.8 -1.72 -0.71 22.5 86 5 4 0 0 0 0 0  
2 3.70 4.20 39.0 -2.83 -0.51 34.4 84 7 6 2 1 0 2 0  
3 1.78 1.79 41.6 -2.14 -0.58 24.6 72 6 2 0 1 1 2 0  MPD 501 B
4 4.15 5.04 41.9 -1.62 -0.64 24.1 82 6 5 1 3 1 0 0  
5 4.04 4.26 54.8 -1.81 -0.59 24.7 83 7 6 2 3 0 1 0  
6 1.68 3.22 61.7 -1.73 -0.48 18.8 76 7 3 2 5 2 2 0  MPD 502 E
7 1.82 2.04 62.0 -1.65 -0.45 23.2 81 7 6 2 4 3 1 0  MPD 501 C
8 1.62 1.91 67.5 -1.56 -0.54 20.0 83 8 6 4 4 0 3 0  
9 1.71 2.55 72.8 -1.75 -0.55 18.0 77 9 2 3 1 2 2 0  MPD 502 F
10 1.00 2.85 81.6 -2.30 -0.68 31.6 86 8 9 5 5 1 0 0  
11 1.66 1.93 89.0 -1.65 -0.51 20.1 81 8 8 6 5 1 4 0  MPD 502 E
12 1.57 1.93 89.6 -2.02 -0.54 26.0 82 13 9 2 3 1 2 0  
13 1.00 2.85 95.0 -1.34 -0.47 19.3 82 8 5 3 10 4 1 0  MPD 501 C
14 1.66 1.68 99.6 -1.87 -0.55 18.9 80 9 4 6 2 3 2 0  MPD 502 F
15 1.81 1.97 102.3 -1.72 -0.58 23.4 85 8 9 6 6 3 1 0  MPD 501 C
16 1.60 1.91 109.5 -2.27 -0.57 27.7 81 17 10 4 5 0 4 0  MPD 501 B
17 1.00 2.87 112.3 -2.01 -0.61 27.2 82 14 12 2 9 1 1 0  
18 1.82 1.98 121.9 -1.75 -0.54 23.8 82 15 11 3 9 3 2 0  MPD 501 C
19 1.61 1.92 134.1 -2.23 -0.57 26.9 85 15 14 8 2 2 2 0  
20 1.75 1.76 138.5 -1.86 -0.59 23.2 83 17 13 5 6 2 1 0  
21 1.00 2.95 147.5 -1.86 -0.59 24.6 84 18 14 5 9 2 2 0  
22 1.73 1.93 154.9 -1.77 -0.54 23.3 82 18 11 5 8 4 3 0  MPD 501 C
23 1.00 2.90 155.0 -1.94 -0.58 24.7 82 19 13 5 9 1 4 0  MPD 501 B
24 1.71 1.94 167.5 -1.81 -0.53 23.0 82 19 13 7 10 3 6 0  MPD 501 B MPD 501 C

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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