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PDBsum entry 7ca5

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Top Page protein Protein-protein interface(s) pores links
Pore analysis for: 7ca5 calculated with MOLE 2.0 PDB id
7ca5
Pores calculated on whole structure Pores calculated excluding ligands

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41 pores, coloured by radius 41 pores, coloured by radius 41 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 2.77 2.77 28.2 -0.09 0.09 4.3 80 1 0 3 8 4 0 0  
2 1.94 2.00 30.9 2.04 0.73 3.2 88 1 1 1 13 3 0 0  
3 1.45 1.69 40.8 1.00 0.08 4.9 87 1 1 2 13 2 1 0  
4 1.80 2.71 43.4 1.34 0.23 2.0 79 1 0 4 13 3 0 0  
5 2.54 2.58 46.8 0.65 0.08 8.0 85 3 2 2 13 2 1 0  
6 1.45 1.65 46.9 0.17 -0.13 7.1 83 3 1 4 11 2 1 0  
7 1.51 1.72 69.7 0.30 -0.01 7.1 76 3 3 3 12 8 1 0  
8 2.30 2.62 70.8 -0.54 -0.15 12.4 78 4 7 3 10 5 2 0  
9 2.53 3.57 77.1 0.70 0.11 5.8 82 4 2 5 23 3 0 0  
10 2.42 2.41 77.9 0.19 -0.07 6.8 88 2 4 9 14 3 2 0  
11 2.76 3.13 79.8 -1.07 -0.64 10.7 94 0 7 10 8 0 2 0  
12 1.73 2.62 89.5 0.70 0.11 5.4 79 1 3 4 24 7 0 0  
13 2.44 2.44 92.7 -0.13 -0.30 7.8 90 1 4 10 13 1 2 1  
14 2.43 2.48 94.6 0.69 0.10 4.8 86 3 3 11 19 4 2 1  
15 1.35 1.54 97.9 -0.54 -0.43 10.3 88 2 5 10 11 2 3 1  
16 2.33 2.44 99.8 0.69 0.15 5.8 82 5 4 7 24 7 2 0  
17 1.38 1.72 99.9 0.22 -0.07 7.3 85 4 4 11 17 5 3 1  
18 1.74 2.51 101.5 0.46 -0.05 5.1 88 0 4 11 15 3 0 1  
19 2.30 2.44 101.7 -0.05 -0.21 8.0 84 3 7 8 18 4 2 0  
20 2.41 3.09 103.2 -0.61 -0.20 10.7 82 5 5 6 14 7 3 0  
21 1.73 2.65 110.4 0.30 -0.13 6.0 88 0 4 10 18 3 2 1  
22 2.20 2.20 28.2 0.60 -0.16 4.8 85 3 0 0 4 1 0 0  
23 2.00 2.38 29.5 0.88 0.06 5.0 77 1 0 0 9 3 0 1  
24 2.21 2.26 32.1 0.62 0.04 5.2 79 1 0 2 6 2 0 3  
25 1.41 1.41 33.8 -0.40 -0.39 3.9 71 1 0 2 2 3 0 2  
26 2.10 2.36 37.3 0.16 0.01 9.1 89 3 0 3 9 1 1 1  
27 1.41 1.41 37.4 0.10 0.03 5.2 76 1 1 1 6 5 0 0  
28 2.19 2.37 41.4 0.80 0.11 3.8 70 1 0 1 7 6 0 3  
29 2.04 2.10 45.5 1.67 0.37 1.5 70 0 0 1 9 3 0 2  
30 1.41 1.41 47.5 -0.07 -0.14 5.1 80 2 0 3 6 3 0 1  
31 1.59 1.67 55.1 0.57 0.01 6.5 82 2 1 2 14 2 0 2  
32 2.00 2.26 55.6 0.47 -0.16 5.1 86 2 1 4 11 3 0 3  
33 2.30 2.57 61.0 0.52 0.00 6.2 89 3 0 6 14 2 1 3  
34 2.69 3.10 64.2 0.43 -0.08 5.8 92 3 1 7 14 2 1 2  
35 1.89 2.20 64.5 0.70 0.03 3.3 90 1 0 7 15 3 1 3  
36 2.13 2.13 71.6 0.72 0.19 6.4 75 2 1 1 15 7 0 0  
37 1.99 1.99 74.5 0.65 0.07 5.9 85 3 1 6 18 3 1 1  
38 1.61 1.68 75.7 1.34 0.16 1.6 78 0 0 1 17 4 0 2  
39 1.43 1.42 89.9 0.35 0.09 6.0 78 3 2 2 16 7 0 0  
40 1.94 1.96 94.0 1.46 0.28 1.6 77 1 0 2 22 7 1 1  
41 1.98 2.14 98.6 0.58 0.12 5.3 78 2 2 5 18 7 0 2  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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