 |
PDBsum entry 7ca5
|
|
|
|
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
|
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
|
|
|
|
|
|
|
|
|
|
Pore analysis for: 7ca5 calculated with MOLE 2.0
|
PDB id
|
|
|
|
7ca5
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
Pores calculated on whole structure |
 |
Pores calculated excluding ligands
|
|
|
 |
 |
 |
 |
 |
|
 |
|
|
|
 |
 |
|
 |
|
|
|
 |
41 pores,
coloured by radius |
 |
41 pores,
coloured by radius
|
41 pores,
coloured as in list below
|
|
|
 |
 |
 |
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. |
|
|
 |
|
|
|
 |
Free R
|
 |
|
|
|
|
 |
Length
|
 |
|
|
|
|
 |
HPathy
|
 |
|
|
|
|
 |
HPhob
|
 |
|
|
|
|
 |
Polar
|
 |
|
|
|
|
 |
Rel Mut
|
 |
|
|
|
|
 |
Residue..type
|
 |
|
|
|
|
 |
Ligands
|
 |
|
|
|
|
|
 |
Radius |
 |
1 |
 |
2.77 |
2.77 |
28.2 |
-0.09 |
0.09 |
4.3 |
80 |
 |
1 |
0 |
3 |
8 |
4 |
0 |
0 |
 |
|
 |
 |
2 |
 |
1.94 |
2.00 |
30.9 |
2.04 |
0.73 |
3.2 |
88 |
1 |
1 |
1 |
13 |
3 |
0 |
0 |
|
 |
3 |
 |
1.45 |
1.69 |
40.8 |
1.00 |
0.08 |
4.9 |
87 |
1 |
1 |
2 |
13 |
2 |
1 |
0 |
|
 |
4 |
 |
1.80 |
2.71 |
43.4 |
1.34 |
0.23 |
2.0 |
79 |
1 |
0 |
4 |
13 |
3 |
0 |
0 |
|
 |
5 |
 |
2.54 |
2.58 |
46.8 |
0.65 |
0.08 |
8.0 |
85 |
3 |
2 |
2 |
13 |
2 |
1 |
0 |
|
 |
6 |
 |
1.45 |
1.65 |
46.9 |
0.17 |
-0.13 |
7.1 |
83 |
3 |
1 |
4 |
11 |
2 |
1 |
0 |
|
 |
7 |
 |
1.51 |
1.72 |
69.7 |
0.30 |
-0.01 |
7.1 |
76 |
3 |
3 |
3 |
12 |
8 |
1 |
0 |
|
 |
8 |
 |
2.30 |
2.62 |
70.8 |
-0.54 |
-0.15 |
12.4 |
78 |
4 |
7 |
3 |
10 |
5 |
2 |
0 |
|
 |
9 |
 |
2.53 |
3.57 |
77.1 |
0.70 |
0.11 |
5.8 |
82 |
4 |
2 |
5 |
23 |
3 |
0 |
0 |
|
 |
10 |
 |
2.42 |
2.41 |
77.9 |
0.19 |
-0.07 |
6.8 |
88 |
2 |
4 |
9 |
14 |
3 |
2 |
0 |
|
 |
11 |
 |
2.76 |
3.13 |
79.8 |
-1.07 |
-0.64 |
10.7 |
94 |
0 |
7 |
10 |
8 |
0 |
2 |
0 |
|
 |
12 |
 |
1.73 |
2.62 |
89.5 |
0.70 |
0.11 |
5.4 |
79 |
1 |
3 |
4 |
24 |
7 |
0 |
0 |
|
 |
13 |
 |
2.44 |
2.44 |
92.7 |
-0.13 |
-0.30 |
7.8 |
90 |
1 |
4 |
10 |
13 |
1 |
2 |
1 |
|
 |
14 |
 |
2.43 |
2.48 |
94.6 |
0.69 |
0.10 |
4.8 |
86 |
3 |
3 |
11 |
19 |
4 |
2 |
1 |
|
 |
15 |
 |
1.35 |
1.54 |
97.9 |
-0.54 |
-0.43 |
10.3 |
88 |
2 |
5 |
10 |
11 |
2 |
3 |
1 |
|
 |
16 |
 |
2.33 |
2.44 |
99.8 |
0.69 |
0.15 |
5.8 |
82 |
5 |
4 |
7 |
24 |
7 |
2 |
0 |
|
 |
17 |
 |
1.38 |
1.72 |
99.9 |
0.22 |
-0.07 |
7.3 |
85 |
4 |
4 |
11 |
17 |
5 |
3 |
1 |
|
 |
18 |
 |
1.74 |
2.51 |
101.5 |
0.46 |
-0.05 |
5.1 |
88 |
0 |
4 |
11 |
15 |
3 |
0 |
1 |
|
 |
19 |
 |
2.30 |
2.44 |
101.7 |
-0.05 |
-0.21 |
8.0 |
84 |
3 |
7 |
8 |
18 |
4 |
2 |
0 |
|
 |
20 |
 |
2.41 |
3.09 |
103.2 |
-0.61 |
-0.20 |
10.7 |
82 |
5 |
5 |
6 |
14 |
7 |
3 |
0 |
|
 |
21 |
 |
1.73 |
2.65 |
110.4 |
0.30 |
-0.13 |
6.0 |
88 |
0 |
4 |
10 |
18 |
3 |
2 |
1 |
|
 |
22 |
 |
2.20 |
2.20 |
28.2 |
0.60 |
-0.16 |
4.8 |
85 |
3 |
0 |
0 |
4 |
1 |
0 |
0 |
|
 |
23 |
 |
2.00 |
2.38 |
29.5 |
0.88 |
0.06 |
5.0 |
77 |
1 |
0 |
0 |
9 |
3 |
0 |
1 |
|
 |
24 |
 |
2.21 |
2.26 |
32.1 |
0.62 |
0.04 |
5.2 |
79 |
1 |
0 |
2 |
6 |
2 |
0 |
3 |
|
 |
25 |
 |
1.41 |
1.41 |
33.8 |
-0.40 |
-0.39 |
3.9 |
71 |
1 |
0 |
2 |
2 |
3 |
0 |
2 |
|
 |
26 |
 |
2.10 |
2.36 |
37.3 |
0.16 |
0.01 |
9.1 |
89 |
3 |
0 |
3 |
9 |
1 |
1 |
1 |
|
 |
27 |
 |
1.41 |
1.41 |
37.4 |
0.10 |
0.03 |
5.2 |
76 |
1 |
1 |
1 |
6 |
5 |
0 |
0 |
|
 |
28 |
 |
2.19 |
2.37 |
41.4 |
0.80 |
0.11 |
3.8 |
70 |
1 |
0 |
1 |
7 |
6 |
0 |
3 |
|
 |
29 |
 |
2.04 |
2.10 |
45.5 |
1.67 |
0.37 |
1.5 |
70 |
0 |
0 |
1 |
9 |
3 |
0 |
2 |
|
 |
30 |
 |
1.41 |
1.41 |
47.5 |
-0.07 |
-0.14 |
5.1 |
80 |
2 |
0 |
3 |
6 |
3 |
0 |
1 |
|
 |
31 |
 |
1.59 |
1.67 |
55.1 |
0.57 |
0.01 |
6.5 |
82 |
2 |
1 |
2 |
14 |
2 |
0 |
2 |
|
 |
32 |
 |
2.00 |
2.26 |
55.6 |
0.47 |
-0.16 |
5.1 |
86 |
2 |
1 |
4 |
11 |
3 |
0 |
3 |
|
 |
33 |
 |
2.30 |
2.57 |
61.0 |
0.52 |
0.00 |
6.2 |
89 |
3 |
0 |
6 |
14 |
2 |
1 |
3 |
|
 |
34 |
 |
2.69 |
3.10 |
64.2 |
0.43 |
-0.08 |
5.8 |
92 |
3 |
1 |
7 |
14 |
2 |
1 |
2 |
|
 |
35 |
 |
1.89 |
2.20 |
64.5 |
0.70 |
0.03 |
3.3 |
90 |
1 |
0 |
7 |
15 |
3 |
1 |
3 |
|
 |
36 |
 |
2.13 |
2.13 |
71.6 |
0.72 |
0.19 |
6.4 |
75 |
2 |
1 |
1 |
15 |
7 |
0 |
0 |
|
 |
37 |
 |
1.99 |
1.99 |
74.5 |
0.65 |
0.07 |
5.9 |
85 |
3 |
1 |
6 |
18 |
3 |
1 |
1 |
|
 |
38 |
 |
1.61 |
1.68 |
75.7 |
1.34 |
0.16 |
1.6 |
78 |
0 |
0 |
1 |
17 |
4 |
0 |
2 |
|
 |
39 |
 |
1.43 |
1.42 |
89.9 |
0.35 |
0.09 |
6.0 |
78 |
3 |
2 |
2 |
16 |
7 |
0 |
0 |
|
 |
40 |
 |
1.94 |
1.96 |
94.0 |
1.46 |
0.28 |
1.6 |
77 |
1 |
0 |
2 |
22 |
7 |
1 |
1 |
|
 |
41 |
 |
1.98 |
2.14 |
98.6 |
0.58 |
0.12 |
5.3 |
78 |
2 |
2 |
5 |
18 |
7 |
0 |
2 |
|
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
Residue-type_colouring |
 |
|
 |
|
Positive
|
Negative
|
Neutral
|
Aliphatic
|
Aromatic
|
Pro & Gly
|
Cysteine
|
|
H,K,R
|
D,E
|
S,T,N,Q
|
A,V,L,I,M
|
F,Y,W
|
P,G
|
C
|
|
|
 |