spacer
spacer

PDBsum entry 7b3v

Go to PDB code: 
Top Page protein ligands tunnels links
Tunnel analysis for: 7b3v calculated with MOLE 2.0 PDB id
7b3v
Tunnels calculated on whole structure Tunnels calculated excluding ligands

View options
MOLEonline 2.0 manipulation
and
visualization
with HETATM:
without HETATM:
 
2 tunnels, coloured by tunnel radius 5 tunnels, coloured by tunnel radius 5 tunnels, coloured as in
list below
Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.
Tunnels
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.13 1.37 15.1 -0.45 0.12 10.4 73 3 3 1 3 2 1 0  
2 1.34 1.38 17.2 1.89 0.58 2.7 80 4 0 0 8 2 2 0  SWB 1401 A
3 1.39 1.39 20.7 1.04 0.36 5.8 83 5 2 1 11 1 0 0  SWB 1401 A
4 1.37 1.38 30.5 0.15 0.18 11.0 81 3 4 1 12 2 0 0  SWB 1401 A
5 1.20 1.20 16.0 0.57 -0.23 3.4 81 2 0 3 11 3 0 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
spacer
spacer