PDBsum entry 7ayh Go to PDB code:  Tunnel analysis for: 7ayh calculated with MOLE 2.0 PDB id 7ayh Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   3 tunnels, coloured by tunnel radius 6 tunnels, coloured by tunnel radius 6 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.36 1.53 17.9 0.40 0.16 13.4 83 1 2 1 6 0 0 1   2 1.30 1.55 23.9 0.33 0.00 9.8 80 2 1 2 6 0 0 1   3 1.71 2.81 24.7 -0.36 -0.14 14.3 78 3 1 2 6 1 0 0  S9H 501 A 4 1.70 2.87 29.0 1.02 0.16 6.8 76 3 0 1 8 0 0 0  S9H 501 A 5 1.68 1.68 29.0 1.16 0.21 5.8 74 2 0 1 8 1 0 0  S9H 501 A 6 1.67 1.67 29.1 0.16 0.12 11.9 78 2 1 2 7 2 0 0  S9H 501 A Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.