spacer
spacer

PDBsum entry 6zph

Go to PDB code: 
Top Page protein ligands metals Protein-protein interface(s) pores links
Pore analysis for: 6zph calculated with MOLE 2.0 PDB id
6zph
Pores calculated on whole structure Pores calculated excluding ligands

View options
MOLEonline 2.0 manipulation
and
visualization
with HETATM:
without HETATM:
 
16 pores, coloured by radius 18 pores, coloured by radius 18 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.59 1.92 33.0 0.23 0.10 5.7 73 1 1 3 4 4 0 0  
2 2.07 2.34 38.7 -2.55 -0.65 29.4 84 7 5 4 0 1 1 0  
3 1.36 2.35 56.9 0.01 0.29 8.7 77 4 0 4 9 3 1 1  
4 1.27 1.66 58.0 -0.67 -0.10 24.1 81 8 6 2 10 1 0 0  
5 1.20 1.20 66.4 0.25 0.30 10.2 80 4 2 5 9 3 0 0  
6 1.45 2.97 68.6 -1.60 -0.43 19.1 83 6 5 7 3 5 0 0  ADP 600 B
7 1.27 1.31 77.2 -0.54 -0.02 16.2 81 8 4 6 9 3 0 0  
8 1.31 1.39 78.1 -0.61 -0.11 15.6 83 7 3 5 8 5 2 0  ADP 600 B
9 2.36 2.81 83.3 -1.25 -0.25 22.6 84 10 7 8 10 3 1 0  
10 1.43 3.00 88.2 -1.69 -0.45 18.5 84 7 6 9 3 5 1 0  ADP 600 B
11 2.99 4.27 89.7 -1.09 -0.30 14.2 80 7 2 6 9 2 1 0  
12 1.35 2.33 91.5 0.04 -0.04 11.8 78 5 2 2 10 2 2 1  
13 1.20 2.11 95.4 -0.66 -0.15 14.3 84 7 3 7 8 5 3 0  ADP 600 B
14 1.21 1.32 106.7 0.05 0.40 16.4 76 9 0 2 14 4 0 1  
15 1.48 1.64 130.3 -1.02 -0.05 22.0 81 13 5 7 12 4 0 1  
16 1.36 2.30 132.2 -0.19 -0.02 14.0 81 12 2 8 19 5 1 1  
17 1.31 1.44 134.1 0.97 0.35 8.3 88 6 0 6 17 5 1 1  
18 1.48 1.64 136.4 -1.23 -0.13 17.4 81 10 2 10 8 4 0 1  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
spacer
spacer